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3FPC
Asym. Unit
Info
Asym.Unit (526 KB)
Biol.Unit 1 (518 KB)
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(1)
Title
:
CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE OF THE COFACTOR BINDING DOMAIN RES 153-294 OF T. BROCKII ADH BY E. HISTOLYTICA ADH
Authors
:
F. Felix, E. Goihberg, L. Shimon, Y. Burstein
Date
:
05 Jan 09 (Deposition) - 19 Jan 10 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxydoreductase, Bacterial Alcohol Dehydrogenase, Domain Exchange, Chimera, Metal-Binding, Nadp, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Goihberg, M. Peretz, S. Tel-Or, O. Dym, L. Shimon, F. Frolow, Y. Burstein
Biochemical And Structural Properties Of Chimeras Constructed By Exchange Of Cofactor-Binding Domains In Alcohol Dehydrogenases From Thermophilic And Mesophilic Microorganisms
Biochemistry V. 49 1943 2010
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close entry info
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Hetero Components
(7, 28)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
1c: CACODYLATE ION (CACc)
1d: CACODYLATE ION (CACd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
3a: IMIDAZOLE (IMDa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
6a: OXYGEN MOLECULE (OXYa)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
7d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAC
4
Ligand/Ion
CACODYLATE ION
2
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
3
IMD
1
Ligand/Ion
IMIDAZOLE
4
NA
2
Ligand/Ion
SODIUM ION
5
NO3
2
Ligand/Ion
NITRATE ION
6
OXY
1
Ligand/Ion
OXYGEN MOLECULE
7
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:37 , HIS A:59 , ASP A:150 , CAC A:354
BINDING SITE FOR RESIDUE ZN A 353
02
AC2
SOFTWARE
CYS A:37 , SER A:39 , HIS A:59 , ILE A:86 , ASP A:150 , THR A:154 , ZN A:353 , HOH A:366 , HOH A:2038 , MET C:285
BINDING SITE FOR RESIDUE CAC A 354
03
AC3
SOFTWARE
LYS A:238 , HOH A:417 , HOH A:764 , HOH A:1853
BINDING SITE FOR RESIDUE OXY A 355
04
AC4
SOFTWARE
CYS B:37 , HIS B:59 , ASP B:150 , CAC B:354
BINDING SITE FOR RESIDUE ZN B 353
05
AC5
SOFTWARE
CYS B:37 , SER B:39 , HIS B:59 , ILE B:86 , ASP B:150 , THR B:154 , ZN B:353 , HOH B:371 , MET D:285
BINDING SITE FOR RESIDUE CAC B 354
06
AC6
SOFTWARE
GLY B:98 , TYR B:99 , GLN B:101 , HIS B:157 , HOH B:466 , HOH B:832 , HOH B:1180 , HOH B:1526
BINDING SITE FOR RESIDUE EDO B 355
07
AC7
SOFTWARE
PRO B:137 , ASP B:307 , PHE B:310 , HOH B:663 , HOH B:1756
BINDING SITE FOR RESIDUE EDO B 356
08
AC8
SOFTWARE
PHE B:25 , ARG B:91 , HOH B:392 , HOH B:1019 , HOH B:1059
BINDING SITE FOR RESIDUE NO3 B 357
09
AC9
SOFTWARE
THR B:169 , ARG B:193 , EDO B:359 , HOH B:708 , HOH B:1069 , ASP C:307 , EDO C:356 , HOH C:478
BINDING SITE FOR RESIDUE EDO B 358
10
BC1
SOFTWARE
THR B:169 , THR B:231 , LYS B:234 , GLY B:235 , VAL B:236 , ASP B:237 , LYS B:257 , EDO B:358 , HOH B:1069 , ARG C:304
BINDING SITE FOR RESIDUE EDO B 359
11
BC2
SOFTWARE
CYS C:37 , HIS C:59 , ASP C:150 , CAC C:354
BINDING SITE FOR RESIDUE ZN C 353
12
BC3
SOFTWARE
MET A:285 , CYS C:37 , SER C:39 , HIS C:59 , ILE C:86 , ASP C:150 , THR C:154 , ZN C:353 , EDO C:357 , HOH C:372
BINDING SITE FOR RESIDUE CAC C 354
13
BC4
SOFTWARE
PHE C:25 , ARG C:91 , ASP C:128 , HOH C:384 , HOH C:590 , HOH C:1222 , HOH C:1495 , ARG D:91
BINDING SITE FOR RESIDUE IMD C 355
14
BC5
SOFTWARE
EDO B:358 , ASP C:307 , PHE C:310 , HOH C:478 , HOH C:1107
BINDING SITE FOR RESIDUE EDO C 356
15
BC6
SOFTWARE
THR C:38 , SER C:39 , VAL C:265 , ASN C:266 , TYR C:267 , CAC C:354 , HOH C:626 , HOH C:691 , HOH C:997
BINDING SITE FOR RESIDUE EDO C 357
16
BC7
SOFTWARE
ASP C:272 , ASN C:273 , HOH C:516 , HOH C:943 , HOH C:1471
BINDING SITE FOR RESIDUE EDO C 358
17
BC8
SOFTWARE
TYR C:99 , GLN C:101 , HIS C:157 , HOH C:458 , HOH C:487 , HOH C:546
BINDING SITE FOR RESIDUE EDO C 359
18
BC9
SOFTWARE
LEU B:166 , ARG C:301 , ARG C:304 , HOH C:678 , HOH C:2058
BINDING SITE FOR RESIDUE EDO C 360
19
CC1
SOFTWARE
ASP C:89 , SER C:103 , ALA C:108 , GLY C:109 , LYS C:111 , HOH C:754
BINDING SITE FOR RESIDUE NA C 361
20
CC2
SOFTWARE
CYS D:37 , SER D:39 , HIS D:59 , ASP D:150 , CAC D:354
BINDING SITE FOR RESIDUE ZN D 353
21
CC3
SOFTWARE
MET B:285 , CYS D:37 , SER D:39 , HIS D:59 , ASP D:150 , THR D:154 , ZN D:353 , HOH D:377
BINDING SITE FOR RESIDUE CAC D 354
22
CC4
SOFTWARE
GLY D:98 , GLN D:101 , HIS D:157 , HOH D:398 , HOH D:959 , HOH D:1626
BINDING SITE FOR RESIDUE EDO D 355
23
CC5
SOFTWARE
GLY A:167 , LYS A:234 , HOH A:1792 , LEU D:300 , GLU D:303 , ARG D:304 , ASP D:307 , HOH D:506 , HOH D:822
BINDING SITE FOR RESIDUE EDO D 356
24
CC6
SOFTWARE
ASP D:307 , PHE D:310 , HOH D:511 , HOH D:1577
BINDING SITE FOR RESIDUE EDO D 357
25
CC7
SOFTWARE
LEU A:166 , ARG D:301 , ARG D:304 , HOH D:918 , HOH D:1116
BINDING SITE FOR RESIDUE EDO D 358
26
CC8
SOFTWARE
ARG C:91 , PHE D:25 , ARG D:91 , HOH D:376 , HOH D:634 , HOH D:1200
BINDING SITE FOR RESIDUE NO3 D 359
27
CC9
SOFTWARE
THR D:38 , SER D:39 , HIS D:42 , VAL D:178 , VAL D:265 , ASN D:266 , TYR D:267 , HOH D:817 , HOH D:973 , HOH D:1209
BINDING SITE FOR RESIDUE EDO D 360
28
DC1
SOFTWARE
PRO D:88 , ASP D:89 , SER D:103 , ALA D:108 , GLY D:109 , LYS D:111 , HOH D:2019
BINDING SITE FOR RESIDUE NA D 361
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:58-72,B:58-72,C:58-72,D:58-72,A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH_THEBR
58-72
4
A:58-72
B:58-72
C:58-72
D:58-72
ADH1_ENTHI
58-72
4
A:58-72
B:58-72
C:58-72
D:58-72
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3fpcA02 (A:162-292)
1b: CATH_3fpcB02 (B:162-292)
1c: CATH_3fpcC02 (C:162-292)
1d: CATH_3fpcD02 (D:162-292)
2a: CATH_3fpcA01 (A:1-161,A:293-352)
2b: CATH_3fpcB01 (B:1-161,B:293-352)
2c: CATH_3fpcC01 (C:1-161,C:293-352)
2d: CATH_3fpcD01 (D:1-161,D:293-352)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermoanaerobium brockii (Thermoanaerobacter brockii, entamoeba histolytica)
(1)
1a
3fpcA02
A:162-292
1b
3fpcB02
B:162-292
1c
3fpcC02
C:162-292
1d
3fpcD02
D:162-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Thermoanaerobium brockii (Thermoanaerobacter brockii, entamoeba histolytica)
(1)
2a
3fpcA01
A:1-161,A:293-352
2b
3fpcB01
B:1-161,B:293-352
2c
3fpcC01
C:1-161,C:293-352
2d
3fpcD01
D:1-161,D:293-352
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (526 KB)
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