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3FO1
Biol. Unit 1
Info
Asym.Unit (146 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HAPTEN COMPLEX OF CATALYTIC ELIMINATION ANTIBODY 13G5 (GLU(L39)ALA MUTANT)
Authors
:
E. W. Debler, I. A. Wilson
Date
:
27 Dec 08 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B,H,L (1x)
Biol. Unit 2: A,B,H,L (1x)
Keywords
:
Immunoglobulin, Catalytic Antibody, Chimeric Fab, Hapten Complex, Acid Base Catalysis, Proton Transfer, Immunoglobulin Domain, Immune System
(Keyword Search:
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Reference
:
E. W. Debler, R. Muller, D. Hilvert, I. A. Wilson
An Aspartate And A Water Molecule Mediate Efficient Acid-Base Catalysis In A Tailored Antibody Pocket.
Proc. Natl. Acad. Sci. Usa V. 106 18539 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)A... (BZHa)
1b: 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)A... (BZHb)
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No.
Name
Count
Type
Full Name
1
BZH
2
Ligand/Ion
5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOICACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP H:35 , TRP H:52 , HIS H:98 , PRO H:105 , MET H:108 , HIS L:31 , PHE L:94 , GLY L:96 , SER L:97 , LEU L:99
BINDING SITE FOR RESIDUE BZH H 401
2
AC2
SOFTWARE
HIS A:31 , PHE A:94 , GLY A:96 , SER A:97 , LEU A:99 , PRO A:101 , ASP B:35 , TRP B:52 , HIS B:98 , ILE B:104 , PRO B:105 , MET B:108 , HOH B:238
BINDING SITE FOR RESIDUE BZH B 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3fo1a2 (A:113-216)
1b: SCOP_d3fo1l2 (L:113-216)
2a: SCOP_d3fo1a1 (A:1-112)
2b: SCOP_d3fo1l1 (L:1-112)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3fo1a2
A:113-216
1b
d3fo1l2
L:113-216
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d3fo1a1
A:1-112
2b
d3fo1l1
L:1-112
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3fo1A02 (A:114-216)
1b: CATH_3fo1H02 (H:124-221)
1c: CATH_3fo1B02 (B:124-221)
1d: CATH_3fo1L02 (L:114-216)
1e: CATH_3fo1B01 (B:1-120)
1f: CATH_3fo1H01 (H:1-120)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse, human (Mus musculus, homo sapiens)
(6)
1a
3fo1A02
A:114-216
1b
3fo1H02
H:124-221
1c
3fo1B02
B:124-221
1d
3fo1L02
L:114-216
1e
3fo1B01
B:1-120
1f
3fo1H01
H:1-120
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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