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3FO1
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HAPTEN COMPLEX OF CATALYTIC ELIMINATION ANTIBODY 13G5 (GLU(L39)ALA MUTANT)
Authors
:
E. W. Debler, I. A. Wilson
Date
:
27 Dec 08 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B,H,L (1x)
Biol. Unit 2: A,B,H,L (1x)
Keywords
:
Immunoglobulin, Catalytic Antibody, Chimeric Fab, Hapten Complex, Acid Base Catalysis, Proton Transfer, Immunoglobulin Domain, Immune System
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Reference
:
E. W. Debler, R. Muller, D. Hilvert, I. A. Wilson
An Aspartate And A Water Molecule Mediate Efficient Acid-Base Catalysis In A Tailored Antibody Pocket.
Proc. Natl. Acad. Sci. Usa V. 106 18539 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)A... (BZHa)
1b: 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)A... (BZHb)
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No.
Name
Count
Type
Full Name
1
BZH
2
Ligand/Ion
5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOICACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP H:35 , TRP H:52 , HIS H:98 , PRO H:105 , MET H:108 , HIS L:31 , PHE L:94 , GLY L:96 , SER L:97 , LEU L:99
BINDING SITE FOR RESIDUE BZH H 401
2
AC2
SOFTWARE
HIS A:31 , PHE A:94 , GLY A:96 , SER A:97 , LEU A:99 , PRO A:101 , ASP B:35 , TRP B:52 , HIS B:98 , ILE B:104 , PRO B:105 , MET B:108 , HOH B:238
BINDING SITE FOR RESIDUE BZH B 401
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3fo1a2 (A:113-216)
1b: SCOP_d3fo1l2 (L:113-216)
2a: SCOP_d3fo1a1 (A:1-112)
2b: SCOP_d3fo1l1 (L:1-112)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d3fo1a2
A:113-216
1b
d3fo1l2
L:113-216
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d3fo1a1
A:1-112
2b
d3fo1l1
L:1-112
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3fo1A02 (A:114-216)
1b: CATH_3fo1H02 (H:124-221)
1c: CATH_3fo1B02 (B:124-221)
1d: CATH_3fo1L02 (L:114-216)
1e: CATH_3fo1B01 (B:1-120)
1f: CATH_3fo1H01 (H:1-120)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse, human (Mus musculus, homo sapiens)
(6)
1a
3fo1A02
A:114-216
1b
3fo1H02
H:124-221
1c
3fo1B02
B:124-221
1d
3fo1L02
L:114-216
1e
3fo1B01
B:1-120
1f
3fo1H01
H:1-120
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Pfam Domains
(0, 0)
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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