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3FNK
Biol. Unit 2
Info
Asym.Unit (102 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND TYPE II COHESIN MODULE FROM THE CELLULOSOMAL ADAPTOR SCAA SCAFFOLDIN OF ACETIVIBRIO CELLULOLYTICUS
Authors
:
I. Noach, F. Frolow, E. A. Bayer
Date
:
25 Dec 08 (Deposition) - 23 Jun 09 (Release) - 28 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cohb, Dockerin-Binding Module, Beta Barrel, Alpha Helix, Beta Flaps, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
I. Noach, F. Frolow, O. Alber, R. Lamed, L. J. W. Shimon, E. A. Bayer
Intermodular Linker Flexibility Revealed From Crystal Structures Of Adjacent Cellulosomal Cohesins Of Acetivibrio Cellulolyticus
J. Mol. Biol. V. 391 86 2009
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,4-BUTANEDIOL (BU1a)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
4a: 1,3-PROPANDIOL (PDOa)
4b: 1,3-PROPANDIOL (PDOb)
4c: 1,3-PROPANDIOL (PDOc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
BU1
1
Ligand/Ion
1,4-BUTANEDIOL
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
PDO
1
Ligand/Ion
1,3-PROPANDIOL
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Sites
(9, 9)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC9 (SOFTWARE)
8: BC1 (SOFTWARE)
9: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY A:163 , TYR A:164 , PHE A:165 , GLN B:43 , SER B:99 , EDO B:190
BINDING SITE FOR RESIDUE ACT A 189
2
AC3
SOFTWARE
SER B:40 , GLY B:41 , SER B:101 , TYR B:102 , LEU B:105 , PHE B:153 , EDO B:192
BINDING SITE FOR RESIDUE PDO A 190
3
AC4
SOFTWARE
ASN B:57 , VAL B:62 , ALA B:63 , SER B:68 , HOH B:300 , HOH B:415 , HOH B:551
BINDING SITE FOR RESIDUE EDO B 188
4
AC5
SOFTWARE
ASN B:38 , GLU B:112 , PRO B:114 , TRP B:155 , HOH B:216 , HOH B:461
BINDING SITE FOR RESIDUE EDO B 189
5
AC6
SOFTWARE
SER A:162 , GLY A:163 , ACT A:189 , GLN B:43 , GLN B:86 , VAL B:88 , ASN B:97 , LEU B:98 , SER B:99
BINDING SITE FOR RESIDUE EDO B 190
6
AC7
SOFTWARE
SER B:10 , ILE B:26 , LYS B:35 , THR B:37 , ILE B:160 , SER B:162 , GLY B:163 , HOH B:497 , HOH B:509
BINDING SITE FOR RESIDUE EDO B 191
7
AC9
SOFTWARE
VAL B:77 , SER B:78 , GLU B:79 , ASP B:80 , HOH B:269 , ASN C:66
BINDING SITE FOR RESIDUE BU1 B 193
8
BC1
SOFTWARE
LYS B:59 , THR B:71 , SER B:72 , HOH B:297
BINDING SITE FOR RESIDUE ACT B 194
9
BC2
SOFTWARE
LYS A:8 , LEU B:105 , GLU B:106 , ARG B:109 , HOH B:235
BINDING SITE FOR RESIDUE PDO B 195
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3fnka_ (A:)
1b: SCOP_d3fnkb_ (B:)
1c: SCOP_d3fnkc_ (C:)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cellulosomal scaffoldin adaptor protein B, ScaB
(6)
Acetivibrio cellulolyticus [TaxId: 35830]
(6)
1a
d3fnka_
A:
1b
d3fnkb_
B:
1c
d3fnkc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3fnkB00 (B:6-176)
1b: CATH_3fnkC00 (C:5-176)
1c: CATH_3fnkA00 (A:3-176)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.680, no name defined]
(14)
Acetivibrio cellulolyticus. Organism_taxid: 35830.
(5)
1a
3fnkB00
B:6-176
1b
3fnkC00
C:5-176
1c
3fnkA00
A:3-176
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
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