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3FNK
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND TYPE II COHESIN MODULE FROM THE CELLULOSOMAL ADAPTOR SCAA SCAFFOLDIN OF ACETIVIBRIO CELLULOLYTICUS
Authors
:
I. Noach, F. Frolow, E. A. Bayer
Date
:
25 Dec 08 (Deposition) - 23 Jun 09 (Release) - 28 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cohb, Dockerin-Binding Module, Beta Barrel, Alpha Helix, Beta Flaps, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Noach, F. Frolow, O. Alber, R. Lamed, L. J. W. Shimon, E. A. Bayer
Intermodular Linker Flexibility Revealed From Crystal Structures Of Adjacent Cellulosomal Cohesins Of Acetivibrio Cellulolyticus
J. Mol. Biol. V. 391 86 2009
(for further references see the
PDB file header
)
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,4-BUTANEDIOL (BU1a)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
4a: 1,3-PROPANDIOL (PDOa)
4b: 1,3-PROPANDIOL (PDOb)
4c: 1,3-PROPANDIOL (PDOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
BU1
1
Ligand/Ion
1,4-BUTANEDIOL
3
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
4
PDO
3
Ligand/Ion
1,3-PROPANDIOL
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:86 , VAL A:88 , ASN A:97 , LEU A:98 , SER A:99 , HOH A:234
BINDING SITE FOR RESIDUE EDO A 188
02
AC2
SOFTWARE
GLY A:163 , TYR A:164 , PHE A:165 , GLN B:43 , SER B:99 , EDO B:190
BINDING SITE FOR RESIDUE ACT A 189
03
AC3
SOFTWARE
SER B:40 , GLY B:41 , SER B:101 , TYR B:102 , LEU B:105 , PHE B:153 , EDO B:192
BINDING SITE FOR RESIDUE PDO A 190
04
AC4
SOFTWARE
ASN B:57 , VAL B:62 , ALA B:63 , SER B:68 , HOH B:300 , HOH B:415 , HOH B:551
BINDING SITE FOR RESIDUE EDO B 188
05
AC5
SOFTWARE
ASN B:38 , GLU B:112 , PRO B:114 , TRP B:155 , HOH B:216 , HOH B:461
BINDING SITE FOR RESIDUE EDO B 189
06
AC6
SOFTWARE
SER A:162 , GLY A:163 , ACT A:189 , GLN B:43 , GLN B:86 , VAL B:88 , ASN B:97 , LEU B:98 , SER B:99
BINDING SITE FOR RESIDUE EDO B 190
07
AC7
SOFTWARE
SER B:10 , ILE B:26 , LYS B:35 , THR B:37 , ILE B:160 , SER B:162 , GLY B:163 , HOH B:497 , HOH B:509
BINDING SITE FOR RESIDUE EDO B 191
08
AC8
SOFTWARE
LYS A:8 , ALA A:9 , PDO A:190 , HOH A:308
BINDING SITE FOR RESIDUE EDO B 192
09
AC9
SOFTWARE
VAL B:77 , SER B:78 , GLU B:79 , ASP B:80 , HOH B:269 , ASN C:66
BINDING SITE FOR RESIDUE BU1 B 193
10
BC1
SOFTWARE
LYS B:59 , THR B:71 , SER B:72 , HOH B:297
BINDING SITE FOR RESIDUE ACT B 194
11
BC2
SOFTWARE
LYS A:8 , LEU B:105 , GLU B:106 , ARG B:109 , HOH B:235
BINDING SITE FOR RESIDUE PDO B 195
12
BC3
SOFTWARE
ASN C:57 , VAL C:62 , ALA C:63 , SER C:68 , HOH C:218 , HOH C:322
BINDING SITE FOR RESIDUE ACT C 188
13
BC4
SOFTWARE
LYS C:59 , THR C:71 , SER C:72 , HOH C:436 , HOH C:442 , HOH C:467
BINDING SITE FOR RESIDUE ACT C 189
14
BC5
SOFTWARE
GLN C:86 , VAL C:88 , ASN C:97 , LEU C:98 , SER C:99
BINDING SITE FOR RESIDUE EDO C 190
15
BC6
SOFTWARE
THR C:65 , ASN C:66 , SER C:67
BINDING SITE FOR RESIDUE EDO C 191
16
BC7
SOFTWARE
LYS C:131 , ALA C:132 , ASN C:173 , ALA C:175 , HOH C:306
BINDING SITE FOR RESIDUE PDO C 192
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3fnka_ (A:)
1b: SCOP_d3fnkb_ (B:)
1c: SCOP_d3fnkc_ (C:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cellulosomal scaffoldin adaptor protein B, ScaB
(6)
Acetivibrio cellulolyticus [TaxId: 35830]
(6)
1a
d3fnka_
A:
1b
d3fnkb_
B:
1c
d3fnkc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3fnkB00 (B:6-176)
1b: CATH_3fnkC00 (C:5-176)
1c: CATH_3fnkA00 (A:3-176)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.680, no name defined]
(14)
Acetivibrio cellulolyticus. Organism_taxid: 35830.
(5)
1a
3fnkB00
B:6-176
1b
3fnkC00
C:5-176
1c
3fnkA00
A:3-176
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
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