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3FN9
Asym. Unit
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Asym.Unit (440 KB)
Biol.Unit 1 (327 KB)
Biol.Unit 2 (327 KB)
Biol.Unit 3 (649 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE BETA-GALACTOSIDASE FROM BACTEROIDES FRAGILIS
Authors
:
U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo, New York Sgx Resear For Structural Genomics (Nysgxrc)
Date
:
23 Dec 08 (Deposition) - 13 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,D (1x)
Biol. Unit 2: A,C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Structural Genomics, Putative Beta-Galactosidase, Glycosidase, Hydrolase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo
Structure Of Putative Beta-Galactosidase From Bacteroides Fragilis
To Be Published
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
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No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:42
BINDING SITE FOR RESIDUE CL A 802
2
AC2
SOFTWARE
ASP A:200 , VAL A:201 , LYS A:300
BINDING SITE FOR RESIDUE CL A 807
3
AC3
SOFTWARE
ASP C:200
BINDING SITE FOR RESIDUE CL C 805
4
AC4
SOFTWARE
ASP D:200 , LYS D:300
BINDING SITE FOR RESIDUE CL D 803
5
AC5
SOFTWARE
TYR D:231
BINDING SITE FOR RESIDUE CL D 804
6
AC6
SOFTWARE
THR D:42 , ARG D:46
BINDING SITE FOR RESIDUE CL D 806
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_3fn9A03 (A:301-602)
1b: CATH_3fn9B03 (B:301-602)
1c: CATH_3fn9C03 (C:301-602)
1d: CATH_3fn9D03 (D:301-602)
2a: CATH_3fn9A02 (A:181-300)
2b: CATH_3fn9B02 (B:181-300)
2c: CATH_3fn9C02 (C:181-300)
2d: CATH_3fn9D02 (D:181-300)
3a: CATH_3fn9A01 (A:22-180)
3b: CATH_3fn9B01 (B:22-180)
3c: CATH_3fn9C01 (C:22-180)
3d: CATH_3fn9D01 (D:22-180)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343.
(3)
1a
3fn9A03
A:301-602
1b
3fn9B03
B:301-602
1c
3fn9C03
C:301-602
1d
3fn9D03
D:301-602
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.320, no name defined]
(46)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343.
(2)
2a
3fn9A02
A:181-300
2b
3fn9B02
B:181-300
2c
3fn9C02
C:181-300
2d
3fn9D02
D:181-300
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Bacteroides fragilis nctc 9343. Organism_taxid: 272559. Strain: nctc 9343.
(2)
3a
3fn9A01
A:22-180
3b
3fn9B01
B:22-180
3c
3fn9C01
C:22-180
3d
3fn9D01
D:22-180
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (440 KB)
Header - Asym.Unit
Biol.Unit 1 (327 KB)
Header - Biol.Unit 1
Biol.Unit 2 (327 KB)
Header - Biol.Unit 2
Biol.Unit 3 (649 KB)
Header - Biol.Unit 3
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