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3FN1
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
E2-RING EXPANSION OF THE NEDD8 CASCADE CONFERS SPECIFICITY TO CULLIN MODIFICATION.
Authors
:
D. T. Huang, O. Ayrault, H. W. Hunt, A. M. Taherbhoy, D. M. Duda, D. C. Scot L. A. Borg, G Neale, P. J. Murray, M. F. Roussel, B. A. Schulman
Date
:
22 Dec 08 (Deposition) - 17 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Atp-Binding, Cell Cycle, Nucleotide-Binding, Ubl Conjugation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Huang, O. Ayrault, H. W. Hunt, A. M. Taherbhoy, D. M. Duda, D. C. Scott, L. A. Borg, G. Neale, P. J. Murray, M. F. Roussel, B. A. Schulman
E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification
Mol. Cell V. 33 483 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (B:35-174)
2: UBIQUITIN_CONJUGAT_1 (B:105-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBE2F_HUMAN
35-174
1
B:35-174
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBE2F_HUMAN
105-120
1
B:105-120
[
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Exons
(13, 13)
Info
All Exons
Exon 1.3 (B:26-40)
Exon 1.6 (B:40-50)
Exon 1.8 (B:50-72)
Exon 1.10c (B:72-94)
Exon 1.11c (B:95-118)
Exon 1.12b (B:118-137)
Exon 1.13a (B:138-148)
Exon 1.14c (B:149-169)
Exon 1.15s (B:170-185)
Exon 2.15 (A:350-374)
Exon 2.16 (A:374-395)
Exon 2.17 (A:396-414)
Exon 2.18b (A:414-441)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1c/1.3
02: Boundary 1.3/1.6
03: Boundary 1.6/1.8
04: Boundary 1.8/1.10c
05: Boundary 1.10c/1.11c
06: Boundary 1.11c/1.12b
07: Boundary 1.12b/1.13a
08: Boundary 1.13a/1.14c
09: Boundary 1.14c/1.15s
10: Boundary 1.15s/-
11: Boundary 2.14/2.15
12: Boundary 2.15/2.16
13: Boundary 2.16/2.17
14: Boundary 2.17/2.18b
15: Boundary 2.18b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000272930
1c
ENSE00001841551
chr2:
238875597-238875774
178
UBE2F_HUMAN
-
0
0
-
-
1.3
ENST00000272930
3
ENSE00000965342
chr2:
238881734-238881867
134
UBE2F_HUMAN
1-40
40
1
B:26-40
15
1.6
ENST00000272930
6
ENSE00001639741
chr2:
238896605-238896634
30
UBE2F_HUMAN
40-50
11
1
B:40-50
11
1.8
ENST00000272930
8
ENSE00001685506
chr2:
238903386-238903451
66
UBE2F_HUMAN
50-72
23
1
B:50-72
23
1.10c
ENST00000272930
10c
ENSE00001722321
chr2:
238925208-238925275
68
UBE2F_HUMAN
72-94
23
1
B:72-94
23
1.11c
ENST00000272930
11c
ENSE00001595446
chr2:
238933983-238934053
71
UBE2F_HUMAN
95-118
24
1
B:95-118
24
1.12b
ENST00000272930
12b
ENSE00001722543
chr2:
238939197-238939254
58
UBE2F_HUMAN
118-137
20
1
B:118-137
20
1.13a
ENST00000272930
13a
ENSE00001619260
chr2:
238940863-238940895
33
UBE2F_HUMAN
138-148
11
1
B:138-148
11
1.14c
ENST00000272930
14c
ENSE00001638076
chr2:
238944519-238944581
63
UBE2F_HUMAN
149-169
21
1
B:149-169
21
1.15s
ENST00000272930
15s
ENSE00001638496
chr2:
238949929-238951236
1308
UBE2F_HUMAN
170-185
16
1
B:170-185
16
2.1a
ENST00000361055
1a
ENSE00001864869
chr3:
69129559-69129485
75
UBA3_HUMAN
1-7
7
0
-
-
2.2a
ENST00000361055
2a
ENSE00001417479
chr3:
69129304-69129263
42
UBA3_HUMAN
7-21
15
0
-
-
2.3a
ENST00000361055
3a
ENSE00000966869
chr3:
69127069-69126949
121
UBA3_HUMAN
21-61
41
0
-
-
2.4a
ENST00000361055
4a
ENSE00001377164
chr3:
69124661-69124581
81
UBA3_HUMAN
62-88
27
0
-
-
2.5a
ENST00000361055
5a
ENSE00001376644
chr3:
69120768-69120686
83
UBA3_HUMAN
89-116
28
0
-
-
2.6
ENST00000361055
6
ENSE00000966872
chr3:
69117159-69117079
81
UBA3_HUMAN
116-143
28
0
-
-
2.7a
ENST00000361055
7a
ENSE00000966873
chr3:
69113262-69113219
44
UBA3_HUMAN
143-158
16
0
-
-
2.8
ENST00000361055
8
ENSE00000966874
chr3:
69112654-69112590
65
UBA3_HUMAN
158-179
22
0
-
-
2.9
ENST00000361055
9
ENSE00000966875
chr3:
69112288-69112133
156
UBA3_HUMAN
180-231
52
0
-
-
2.10
ENST00000361055
10
ENSE00000966876
chr3:
69111330-69111228
103
UBA3_HUMAN
232-266
35
0
-
-
2.11a
ENST00000361055
11a
ENSE00000966877
chr3:
69111078-69110965
114
UBA3_HUMAN
266-304
39
0
-
-
2.12
ENST00000361055
12
ENSE00000966878
chr3:
69106460-69106407
54
UBA3_HUMAN
304-322
19
0
-
-
2.13
ENST00000361055
13
ENSE00001656120
chr3:
69105966-69105930
37
UBA3_HUMAN
322-334
13
0
-
-
2.14
ENST00000361055
14
ENSE00001685710
chr3:
69105844-69105763
82
UBA3_HUMAN
334-361
28
0
-
-
2.15
ENST00000361055
15
ENSE00001754233
chr3:
69105434-69105334
101
UBA3_HUMAN
362-395
34
1
A:350-374
25
2.16
ENST00000361055
16
ENSE00001711956
chr3:
69105214-69105151
64
UBA3_HUMAN
395-416
22
1
A:374-395
22
2.17
ENST00000361055
17
ENSE00001673741
chr3:
69105056-69105002
55
UBA3_HUMAN
417-435
19
1
A:396-414
19
2.18b
ENST00000361055
18b
ENSE00001518240
chr3:
69104676-69103881
796
UBA3_HUMAN
435-463
29
1
A:414-441
28
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3fn1b_ (B:)
2a: SCOP_d3fn1a_ (A:)
View:
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Classes
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
automated matches
(16)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3fn1b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Activating enzymes of the ubiquitin-like proteins
(27)
Superfamily
:
Activating enzymes of the ubiquitin-like proteins
(27)
Family
:
Ubiquitin activating enzymes (UBA)
(21)
Protein domain
:
UBA3
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
2a
d3fn1a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Nucleic
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Asymmetric Unit 1
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