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3FM4
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII
Authors
:
K. Piontek, A. T. Martinez, T. Choinowski, D. A. Plattner
Date
:
19 Dec 08 (Deposition) - 22 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Class Ii (Fungal) Peroxidases, Protoporphyrin Ix, Electron Transfer, Lignin Peroxidase, Lignin Degradation, Manganese Peroxidase, Mn- Independent Oxidation Phenolic Non-Phenolic Aromatics, Mnii Oxidation, Peroxidase, Polyvalent Peroxidase, Oxidoreductase, Heme, Hydrogen Peroxide, Iron, Manganese, Metal-Binding, Secreted, Zymogen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Piontek, T. Choinowski, M. Perez-Boada, F. J. Ruiz-Duenas, M. J. Martinez, D. A. Plattner, A. T. Martinez
Structural And Site-Directed Mutagenesis Study Of Versatile Peroxidase Oxidizing Both Mn(Ii) And Aromatic Substrates
To Be Published
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Hetero Components
(5, 13)
Info
All Hetero Components
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
FE
2
Ligand/Ion
FE (III) ION
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
ZN
6
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:39 , GLU A:40 , LEU A:42 , ARG A:43 , PHE A:46 , PRO A:139 , GLU A:140 , PRO A:141 , LEU A:165 , LEU A:166 , SER A:168 , HIS A:169 , ALA A:172 , ALA A:173 , ALA A:174 , ALA A:175 , LYS A:176 , VAL A:177 , PHE A:186 , LEU A:228 , SER A:230 , HOH A:385 , HOH A:510 , HOH A:631 , HOH A:690
BINDING SITE FOR RESIDUE HEM A 350
02
AC2
SOFTWARE
ASP A:48 , GLY A:60 , ASP A:62 , SER A:64 , HOH A:342 , HOH A:456
BINDING SITE FOR RESIDUE CA A 351
03
AC3
SOFTWARE
SER A:170 , ASP A:187 , THR A:189 , VAL A:192 , ASP A:194
BINDING SITE FOR RESIDUE CA A 352
04
AC4
SOFTWARE
ASP A:30 , GLU A:37 , HIS A:232 , ARG A:236 , HOH A:432
BINDING SITE FOR RESIDUE ZN A 332
05
AC5
SOFTWARE
GLU A:26 , ASP A:237 , HOH A:345 , HOH A:499
BINDING SITE FOR RESIDUE ZN A 333
06
AC6
SOFTWARE
GLU A:140 , ASP A:143 , CAC A:340 , CAC A:341
BINDING SITE FOR RESIDUE ZN A 334
07
AC7
SOFTWARE
HIS A:293 , ASP A:318 , HOH A:647
BINDING SITE FOR RESIDUE FE A 335
08
AC8
SOFTWARE
HIS A:95 , HOH A:497
BINDING SITE FOR RESIDUE ZN A 336
09
AC9
SOFTWARE
HIS A:136 , CAC A:340 , CAC A:341 , HOH A:469 , HOH A:593
BINDING SITE FOR RESIDUE ZN A 337
10
BC1
SOFTWARE
GLU A:36 , GLU A:40 , GLU A:83 , GLN A:219 , HOH A:563
BINDING SITE FOR RESIDUE ZN A 338
11
BC2
SOFTWARE
ASP A:69 , LYS A:89 , HOH A:366 , HOH A:447 , HOH A:583
BINDING SITE FOR RESIDUE FE A 339
12
BC3
SOFTWARE
HIS A:136 , VAL A:138 , GLU A:140 , ASP A:143 , ZN A:334 , ZN A:337 , CAC A:341 , HOH A:375 , HOH A:469 , HOH A:519
BINDING SITE FOR RESIDUE CAC A 340
13
BC4
SOFTWARE
HIS A:136 , GLU A:140 , ASP A:143 , ZN A:334 , ZN A:337 , CAC A:340 , HOH A:373 , HOH A:469
BINDING SITE FOR RESIDUE CAC A 341
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:38-49)
2: PEROXIDASE_1 (A:161-171)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
VPL2_PLEER
68-79
1
A:38-49
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
VPL2_PLEER
191-201
1
A:161-171
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3fm4a_ (A:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Pleurotus eryngii [TaxId: 5323]
(14)
1a
d3fm4a_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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