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3FM1
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII
Authors
:
K. Piontek, A. T. Martinez, T. Choinowski, D. A. Plattner
Date
:
19 Dec 08 (Deposition) - 22 Dec 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Class Ii (Fungal) Peroxidases, Protoporphyrin Ix, Electron Transfer, Lignin Peroxidase, Lignin Degradation, Manganese Peroxidase, Mn-Independent Oxidation Phenolic Non-Phenolic Aromatics, Mnii Oxidation, Peroxidase, Polyvalent Peroxidase, Oxidoreductase, Calcium, Heme, Hydrogen Peroxide, Iron, Manganese, Metal-Binding, Organic Radical, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Piontek, T. Choinowski, M. Perez-Boada, F. J. Ruiz-Duenas, M. J. Martinez, D. A. Plattner, A. T. Martinez
Structural And Site-Directed Mutagenesis Study Of Versatile Peroxidase Oxidizing Both Mn(Ii) And Aromatic Substrates
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: MANGANESE (II) ION (MNa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
FE
3
Ligand/Ion
FE (III) ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MN
1
Ligand/Ion
MANGANESE (II) ION
5
NA
5
Ligand/Ion
SODIUM ION
6
ZN
3
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:36 , HIS A:39 , GLU A:40 , LEU A:42 , ARG A:43 , PHE A:46 , GLU A:140 , PRO A:141 , LEU A:165 , LEU A:166 , SER A:168 , HIS A:169 , ALA A:172 , ALA A:173 , ALA A:174 , ASP A:175 , LYS A:176 , VAL A:177 , PHE A:186 , LEU A:228 , SER A:230 , MN A:353 , HOH A:434 , HOH A:470 , HOH A:805 , HOH A:1159 , HOH A:1160
BINDING SITE FOR RESIDUE HEM A 350
02
AC2
SOFTWARE
ASP A:48 , GLY A:60 , ASP A:62 , SER A:64 , HOH A:346 , HOH A:816
BINDING SITE FOR RESIDUE CA A 351
03
AC3
SOFTWARE
SER A:170 , ASP A:187 , THR A:189 , VAL A:192 , ASP A:194
BINDING SITE FOR RESIDUE CA A 352
04
AC4
SOFTWARE
GLU A:36 , GLU A:40 , ASP A:175 , HEM A:350 , HOH A:1158 , HOH A:1159
BINDING SITE FOR RESIDUE MN A 353
05
AC5
SOFTWARE
ASP A:30 , GLU A:37 , HIS A:232 , HOH A:420
BINDING SITE FOR RESIDUE ZN A 332
06
AC6
SOFTWARE
GLU A:26 , ASP A:237 , NA A:338 , HOH A:530 , HOH A:532 , HOH A:534 , HOH A:1174
BINDING SITE FOR RESIDUE ZN A 333
07
AC7
SOFTWARE
HIS A:293 , ASP A:318 , HOH A:1053 , HOH A:1129 , HOH A:1130 , HOH A:1133
BINDING SITE FOR RESIDUE FE A 334
08
AC8
SOFTWARE
GLU A:36 , GLU A:40 , GLU A:83 , FE A:336 , HOH A:432 , HOH A:755 , HOH A:1166 , HOH A:1167
BINDING SITE FOR RESIDUE ZN A 335
09
AC9
SOFTWARE
GLU A:83 , ASP A:175 , ZN A:335 , HOH A:1163 , HOH A:1164 , HOH A:1165 , HOH A:1166 , HOH A:1167
BINDING SITE FOR RESIDUE FE A 336
10
BC1
SOFTWARE
NA A:340 , HOH A:508 , HOH A:512 , HOH A:513 , HOH A:1171 , HOH A:1175
BINDING SITE FOR RESIDUE FE A 337
11
BC2
SOFTWARE
ASP A:146 , ZN A:333 , HOH A:528 , HOH A:529 , HOH A:530 , HOH A:532 , HOH A:864 , HOH A:1174
BINDING SITE FOR RESIDUE NA A 338
12
BC3
SOFTWARE
HOH A:940 , HOH A:941 , HOH A:942 , HOH A:943 , HOH A:944 , HOH A:945
BINDING SITE FOR RESIDUE NA A 339
13
BC4
SOFTWARE
ASP A:128 , FE A:337 , HOH A:505 , HOH A:506 , HOH A:508 , HOH A:513 , HOH A:1171
BINDING SITE FOR RESIDUE NA A 340
14
BC5
SOFTWARE
PHE A:142 , HOH A:522 , HOH A:523 , HOH A:524 , HOH A:525 , HOH A:1170
BINDING SITE FOR RESIDUE NA A 341
15
BC6
SOFTWARE
HOH A:1177 , HOH A:1178 , HOH A:1181 , HOH A:1183 , HOH A:1184 , HOH A:1185
BINDING SITE FOR RESIDUE NA A 342
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:38-49)
2: PEROXIDASE_1 (A:161-171)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
VPL2_PLEER
68-79
1
A:38-49
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
VPL2_PLEER
191-201
1
A:161-171
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3fm1a_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Pleurotus eryngii [TaxId: 5323]
(14)
1a
d3fm1a_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (76 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
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