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3FID
Biol. Unit 2
Info
Asym.Unit (111 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
LPXR FROM SALMONELLA TYPHIMURIUM
Authors
:
L. Rutten, P. Gros
Date
:
11 Dec 08 (Deposition) - 10 Feb 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lipopolysaccharide-Modifying Outer Membrane Enzyme, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Rutten, J. -P. B. A. Mannie, C. M. Stead, C. R. H. Raetz, C. M. Reynolds A. M. J. J. Bonvin, J. P. Tommassen, M. R. Egmond, M. S. Trent, P. Gros
Active-Site Architecture And Catalytic Mechanism Of The Lipid A Deacylase Lpxr Of Salmonella Typhimurium
Proc. Natl. Acad. Sci. Usa V. 106 1960 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEa)
1b: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEb)
1c: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEc)
1d: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEd)
1e: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEe)
1f: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEf)
1g: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEg)
1h: PENTAETHYLENE GLYCOL MONODECYL ETH... (CXEh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CXE
4
Ligand/Ion
PENTAETHYLENE GLYCOL MONODECYL ETHER
2
GOL
2
Ligand/Ion
GLYCEROL
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
SER A:1 , TYR A:41 , HIS A:43 , ZN A:297 , HOH B:431
BINDING SITE FOR RESIDUE ZN A 298
02
AC4
SOFTWARE
HIS A:25 , ASP A:29 , HIS B:25 , ASP B:29
BINDING SITE FOR RESIDUE ZN A 300
03
BC3
SOFTWARE
SER B:1 , ASP B:44 , ZN B:298
BINDING SITE FOR RESIDUE ZN B 297
04
BC4
SOFTWARE
SER B:1 , TYR B:41 , HIS B:43 , ZN B:297 , HOH B:431
BINDING SITE FOR RESIDUE ZN B 298
05
BC5
SOFTWARE
HIS B:54 , HIS B:84 , ASP B:104 , HOH B:327
BINDING SITE FOR RESIDUE ZN B 299
06
BC6
SOFTWARE
ASN B:9 , ASP B:10 , THR B:34 , GOL B:302
BINDING SITE FOR RESIDUE ZN B 300
07
BC7
SOFTWARE
TYR B:60 , ARG B:77 , LEU B:201 , ARG B:226 , ASN B:231 , THR B:233 , GLU B:278 , HOH B:416 , HOH B:426 , HOH B:493
BINDING SITE FOR RESIDUE GOL B 301
08
BC8
SOFTWARE
ASN B:9 , ASP B:10 , THR B:34 , ZN B:300 , HOH B:482 , HOH B:553
BINDING SITE FOR RESIDUE GOL B 302
09
BC9
SOFTWARE
SER B:18
BINDING SITE FOR RESIDUE CXE B 303
10
CC1
SOFTWARE
ILE A:157 , SER B:18
BINDING SITE FOR RESIDUE CXE B 304
11
CC2
SOFTWARE
LEU B:22 , LYS B:274
BINDING SITE FOR RESIDUE CXE B 305
12
CC3
SOFTWARE
PRO B:166 , GLU B:167 , VAL B:168 , GLY B:182 , VAL B:223 , ARG B:225 , ASP B:253
BINDING SITE FOR RESIDUE CXE B 306
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exon Boundaries
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3fidA00 (A:1-296)
1b: CATH_3fidB00 (B:1-296)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
Putative outer membrane protein (lpxr)
(1)
Salmonella typhimurium. Organism_taxid: 602. Strain: strain lt2.
(1)
1a
3fidA00
A:1-296
1b
3fidB00
B:1-296
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
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