PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3FI0
Asym. Unit
Info
Asym.Unit (906 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (109 KB)
Biol.Unit 3 (109 KB)
Biol.Unit 4 (110 KB)
Biol.Unit 5 (110 KB)
Biol.Unit 6 (109 KB)
Biol.Unit 7 (110 KB)
Biol.Unit 8 (110 KB)
Biol.Unit 9 (109 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF B. STEAROTHERMOPHILUS TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHAN, AMP, AND INORGANIC PHOSPHATE
Authors
:
P. Laowanapiban, M. Kapustina, C. Vonrhein, M. Delarue, P. Koehl, C. W. Carter Jr.
Date
:
10 Dec 08 (Deposition) - 03 Feb 09 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Biol. Unit 4: G,J (1x)
Biol. Unit 5: H,K (1x)
Biol. Unit 6: I,L (1x)
Biol. Unit 7: M,P (1x)
Biol. Unit 8: N,Q (1x)
Biol. Unit 9: O,R (1x)
Keywords
:
Domain Rearrangement, Aminoacyl-Trna Synthetase, Atp- Binding, Cytoplasm, Ligase, Nucleotide-Binding, Protein Biosynthesis, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Laowanapiban, M. Kapustina, C. Vonrhein, M. Delarue, P. Koehl, C. W. Carter
Independent Saturation Of Three Trprs Subsites Generates A Partially Assembled State Similar To Those Observed In Molecular Simulations.
Proc. Natl. Acad. Sci. Usa V. 106 1790 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 234)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
1e: ADENOSINE MONOPHOSPHATE (AMPe)
1f: ADENOSINE MONOPHOSPHATE (AMPf)
1g: ADENOSINE MONOPHOSPHATE (AMPg)
1h: ADENOSINE MONOPHOSPHATE (AMPh)
1i: ADENOSINE MONOPHOSPHATE (AMPi)
1j: ADENOSINE MONOPHOSPHATE (AMPj)
1k: ADENOSINE MONOPHOSPHATE (AMPk)
1l: ADENOSINE MONOPHOSPHATE (AMPl)
1m: ADENOSINE MONOPHOSPHATE (AMPm)
1n: ADENOSINE MONOPHOSPHATE (AMPn)
1o: ADENOSINE MONOPHOSPHATE (AMPo)
1p: ADENOSINE MONOPHOSPHATE (AMPp)
1q: ADENOSINE MONOPHOSPHATE (AMPq)
1r: ADENOSINE MONOPHOSPHATE (AMPr)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2be: SELENOMETHIONINE (MSEbe)
2bf: SELENOMETHIONINE (MSEbf)
2bg: SELENOMETHIONINE (MSEbg)
2bh: SELENOMETHIONINE (MSEbh)
2bi: SELENOMETHIONINE (MSEbi)
2bj: SELENOMETHIONINE (MSEbj)
2bk: SELENOMETHIONINE (MSEbk)
2bl: SELENOMETHIONINE (MSEbl)
2bm: SELENOMETHIONINE (MSEbm)
2bn: SELENOMETHIONINE (MSEbn)
2bo: SELENOMETHIONINE (MSEbo)
2bp: SELENOMETHIONINE (MSEbp)
2bq: SELENOMETHIONINE (MSEbq)
2br: SELENOMETHIONINE (MSEbr)
2bs: SELENOMETHIONINE (MSEbs)
2bt: SELENOMETHIONINE (MSEbt)
2bu: SELENOMETHIONINE (MSEbu)
2bv: SELENOMETHIONINE (MSEbv)
2bw: SELENOMETHIONINE (MSEbw)
2bx: SELENOMETHIONINE (MSEbx)
2by: SELENOMETHIONINE (MSEby)
2bz: SELENOMETHIONINE (MSEbz)
2c: SELENOMETHIONINE (MSEc)
2ca: SELENOMETHIONINE (MSEca)
2cb: SELENOMETHIONINE (MSEcb)
2cc: SELENOMETHIONINE (MSEcc)
2cd: SELENOMETHIONINE (MSEcd)
2ce: SELENOMETHIONINE (MSEce)
2cf: SELENOMETHIONINE (MSEcf)
2cg: SELENOMETHIONINE (MSEcg)
2ch: SELENOMETHIONINE (MSEch)
2ci: SELENOMETHIONINE (MSEci)
2cj: SELENOMETHIONINE (MSEcj)
2ck: SELENOMETHIONINE (MSEck)
2cl: SELENOMETHIONINE (MSEcl)
2cm: SELENOMETHIONINE (MSEcm)
2cn: SELENOMETHIONINE (MSEcn)
2co: SELENOMETHIONINE (MSEco)
2cp: SELENOMETHIONINE (MSEcp)
2cq: SELENOMETHIONINE (MSEcq)
2cr: SELENOMETHIONINE (MSEcr)
2cs: SELENOMETHIONINE (MSEcs)
2ct: SELENOMETHIONINE (MSEct)
2cu: SELENOMETHIONINE (MSEcu)
2cv: SELENOMETHIONINE (MSEcv)
2cw: SELENOMETHIONINE (MSEcw)
2cx: SELENOMETHIONINE (MSEcx)
2cy: SELENOMETHIONINE (MSEcy)
2cz: SELENOMETHIONINE (MSEcz)
2d: SELENOMETHIONINE (MSEd)
2da: SELENOMETHIONINE (MSEda)
2db: SELENOMETHIONINE (MSEdb)
2dc: SELENOMETHIONINE (MSEdc)
2dd: SELENOMETHIONINE (MSEdd)
2de: SELENOMETHIONINE (MSEde)
2df: SELENOMETHIONINE (MSEdf)
2dg: SELENOMETHIONINE (MSEdg)
2dh: SELENOMETHIONINE (MSEdh)
2di: SELENOMETHIONINE (MSEdi)
2dj: SELENOMETHIONINE (MSEdj)
2dk: SELENOMETHIONINE (MSEdk)
2dl: SELENOMETHIONINE (MSEdl)
2dm: SELENOMETHIONINE (MSEdm)
2dn: SELENOMETHIONINE (MSEdn)
2do: SELENOMETHIONINE (MSEdo)
2dp: SELENOMETHIONINE (MSEdp)
2dq: SELENOMETHIONINE (MSEdq)
2dr: SELENOMETHIONINE (MSEdr)
2ds: SELENOMETHIONINE (MSEds)
2dt: SELENOMETHIONINE (MSEdt)
2du: SELENOMETHIONINE (MSEdu)
2dv: SELENOMETHIONINE (MSEdv)
2dw: SELENOMETHIONINE (MSEdw)
2dx: SELENOMETHIONINE (MSEdx)
2dy: SELENOMETHIONINE (MSEdy)
2dz: SELENOMETHIONINE (MSEdz)
2e: SELENOMETHIONINE (MSEe)
2ea: SELENOMETHIONINE (MSEea)
2eb: SELENOMETHIONINE (MSEeb)
2ec: SELENOMETHIONINE (MSEec)
2ed: SELENOMETHIONINE (MSEed)
2ee: SELENOMETHIONINE (MSEee)
2ef: SELENOMETHIONINE (MSEef)
2eg: SELENOMETHIONINE (MSEeg)
2eh: SELENOMETHIONINE (MSEeh)
2ei: SELENOMETHIONINE (MSEei)
2ej: SELENOMETHIONINE (MSEej)
2ek: SELENOMETHIONINE (MSEek)
2el: SELENOMETHIONINE (MSEel)
2em: SELENOMETHIONINE (MSEem)
2en: SELENOMETHIONINE (MSEen)
2eo: SELENOMETHIONINE (MSEeo)
2ep: SELENOMETHIONINE (MSEep)
2eq: SELENOMETHIONINE (MSEeq)
2er: SELENOMETHIONINE (MSEer)
2es: SELENOMETHIONINE (MSEes)
2et: SELENOMETHIONINE (MSEet)
2eu: SELENOMETHIONINE (MSEeu)
2ev: SELENOMETHIONINE (MSEev)
2ew: SELENOMETHIONINE (MSEew)
2ex: SELENOMETHIONINE (MSEex)
2ey: SELENOMETHIONINE (MSEey)
2ez: SELENOMETHIONINE (MSEez)
2f: SELENOMETHIONINE (MSEf)
2fa: SELENOMETHIONINE (MSEfa)
2fb: SELENOMETHIONINE (MSEfb)
2fc: SELENOMETHIONINE (MSEfc)
2fd: SELENOMETHIONINE (MSEfd)
2fe: SELENOMETHIONINE (MSEfe)
2ff: SELENOMETHIONINE (MSEff)
2fg: SELENOMETHIONINE (MSEfg)
2fh: SELENOMETHIONINE (MSEfh)
2fi: SELENOMETHIONINE (MSEfi)
2fj: SELENOMETHIONINE (MSEfj)
2fk: SELENOMETHIONINE (MSEfk)
2fl: SELENOMETHIONINE (MSEfl)
2fm: SELENOMETHIONINE (MSEfm)
2fn: SELENOMETHIONINE (MSEfn)
2fo: SELENOMETHIONINE (MSEfo)
2fp: SELENOMETHIONINE (MSEfp)
2fq: SELENOMETHIONINE (MSEfq)
2fr: SELENOMETHIONINE (MSEfr)
2fs: SELENOMETHIONINE (MSEfs)
2ft: SELENOMETHIONINE (MSEft)
2fu: SELENOMETHIONINE (MSEfu)
2fv: SELENOMETHIONINE (MSEfv)
2fw: SELENOMETHIONINE (MSEfw)
2fx: SELENOMETHIONINE (MSEfx)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
3i: PHOSPHATE ION (PO4i)
3j: PHOSPHATE ION (PO4j)
3k: PHOSPHATE ION (PO4k)
3l: PHOSPHATE ION (PO4l)
3m: PHOSPHATE ION (PO4m)
3n: PHOSPHATE ION (PO4n)
3o: PHOSPHATE ION (PO4o)
3p: PHOSPHATE ION (PO4p)
3q: PHOSPHATE ION (PO4q)
3r: PHOSPHATE ION (PO4r)
4a: TRYPTOPHAN (TRPa)
4b: TRYPTOPHAN (TRPb)
4c: TRYPTOPHAN (TRPc)
4d: TRYPTOPHAN (TRPd)
4e: TRYPTOPHAN (TRPe)
4f: TRYPTOPHAN (TRPf)
4g: TRYPTOPHAN (TRPg)
4h: TRYPTOPHAN (TRPh)
4i: TRYPTOPHAN (TRPi)
4j: TRYPTOPHAN (TRPj)
4k: TRYPTOPHAN (TRPk)
4l: TRYPTOPHAN (TRPl)
4m: TRYPTOPHAN (TRPm)
4n: TRYPTOPHAN (TRPn)
4o: TRYPTOPHAN (TRPo)
4p: TRYPTOPHAN (TRPp)
4q: TRYPTOPHAN (TRPq)
4r: TRYPTOPHAN (TRPr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
18
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
MSE
180
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
18
Ligand/Ion
PHOSPHATE ION
4
TRP
18
Mod. Amino Acid
TRYPTOPHAN
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:7 , HIS A:43 , ASP A:132 , ILE A:133
BINDING SITE FOR RESIDUE TRP A 1001
02
AC2
SOFTWARE
PHE D:5 , GLY D:7 , GLN D:9 , HIS D:43 , ASP D:132 , ILE D:133 , GLN D:147
BINDING SITE FOR RESIDUE TRP D 1001
03
AC3
SOFTWARE
GLY B:7 , HIS B:43 , ASP B:132 , GLN B:147
BINDING SITE FOR RESIDUE TRP B 1001
04
AC4
SOFTWARE
GLY C:7 , HIS C:43 , ASP C:132 , ILE C:133
BINDING SITE FOR RESIDUE TRP C 1001
05
AC5
SOFTWARE
HIS E:43 , ASP E:132 , ILE E:133
BINDING SITE FOR RESIDUE TRP E 1001
06
AC6
SOFTWARE
GLY F:7 , HIS F:43 , ASP F:132 , ILE F:133
BINDING SITE FOR RESIDUE TRP F 1001
07
AC7
SOFTWARE
HIS G:43 , ASP G:132 , ILE G:133 , GLN G:147
BINDING SITE FOR RESIDUE TRP G 1001
08
AC8
SOFTWARE
GLY H:7 , GLN H:9 , HIS H:43 , ASP H:132 , ILE H:133
BINDING SITE FOR RESIDUE TRP H 1001
09
AC9
SOFTWARE
PHE I:5 , HIS I:43 , ASP I:132 , ILE I:133 , GLN I:147
BINDING SITE FOR RESIDUE TRP I 1001
10
BC1
SOFTWARE
PHE J:5 , HIS J:43 , ASP J:132 , ILE J:133 , GLN J:147
BINDING SITE FOR RESIDUE TRP J 1001
11
BC2
SOFTWARE
GLY K:7 , HIS K:43 , ASP K:132 , ILE K:133
BINDING SITE FOR RESIDUE TRP K 1001
12
BC3
SOFTWARE
GLY L:7 , HIS L:43 , ASP L:132
BINDING SITE FOR RESIDUE TRP L 1001
13
BC4
SOFTWARE
HIS M:43 , ASP M:132 , ILE M:133
BINDING SITE FOR RESIDUE TRP M 1001
14
BC5
SOFTWARE
PHE N:5 , HIS N:43 , ASP N:132 , ILE N:133 , GLN N:147
BINDING SITE FOR RESIDUE TRP N 1001
15
BC6
SOFTWARE
GLN O:9 , HIS O:43 , ASP O:132 , ILE O:133
BINDING SITE FOR RESIDUE TRP O 1001
16
BC7
SOFTWARE
PHE P:5 , GLN P:9 , HIS P:43 , ASP P:132 , ILE P:133 , GLN P:147
BINDING SITE FOR RESIDUE TRP P 1001
17
BC8
SOFTWARE
GLY Q:7 , HIS Q:43 , ASP Q:132
BINDING SITE FOR RESIDUE TRP Q 1001
18
BC9
SOFTWARE
GLN R:9 , HIS R:43 , ASP R:132 , ILE R:133 , GLN R:147
BINDING SITE FOR RESIDUE TRP R 1001
19
CC1
SOFTWARE
ASN A:18 , SER A:194 , LYS A:195
BINDING SITE FOR RESIDUE PO4 A 1002
20
CC2
SOFTWARE
GLY A:17 , ASN A:18 , ASP A:146 , ILE A:183 , LYS A:192
BINDING SITE FOR RESIDUE AMP A 1003
21
CC3
SOFTWARE
ASN D:18 , LYS D:192 , SER D:194 , LYS D:195 , SER D:196
BINDING SITE FOR RESIDUE PO4 D 1002
22
CC4
SOFTWARE
GLY D:17 , ASN D:18 , ALA D:22 , ILE D:183 , LYS D:192
BINDING SITE FOR RESIDUE AMP D 1003
23
CC5
SOFTWARE
LYS B:192 , SER B:194 , LYS B:195 , SER B:196
BINDING SITE FOR RESIDUE PO4 B 1002
24
CC6
SOFTWARE
GLY B:17 , ASN B:18 , ARG B:182 , ILE B:183 , LYS B:192
BINDING SITE FOR RESIDUE AMP B 1003
25
CC7
SOFTWARE
SER C:194 , LYS C:195 , SER C:196
BINDING SITE FOR RESIDUE PO4 C 1002
26
CC8
SOFTWARE
GLY C:17 , ASN C:18 , ILE C:176 , ILE C:183 , LYS C:192 , TRP C:1001
BINDING SITE FOR RESIDUE AMP C 1003
27
CC9
SOFTWARE
SER E:194 , LYS E:195
BINDING SITE FOR RESIDUE PO4 E 1002
28
DC1
SOFTWARE
GLY E:17 , GLY E:21 , ALA E:22 , ILE E:176 , ILE E:183 , LYS E:192
BINDING SITE FOR RESIDUE AMP E 1003
29
DC2
SOFTWARE
SER F:194 , LYS F:195
BINDING SITE FOR RESIDUE PO4 F 1002
30
DC3
SOFTWARE
GLY F:17 , ASN F:18 , GLY F:21 , GLN F:147 , ILE F:183 , TRP F:1001
BINDING SITE FOR RESIDUE AMP F 1003
31
DC4
SOFTWARE
SER G:194 , LYS G:195
BINDING SITE FOR RESIDUE PO4 G 1002
32
DC5
SOFTWARE
GLY G:17 , ASN G:18 , ILE G:183 , LYS G:192
BINDING SITE FOR RESIDUE AMP G 1003
33
DC6
SOFTWARE
ASN H:18 , LYS H:192 , SER H:194 , LYS H:195 , SER H:196
BINDING SITE FOR RESIDUE PO4 H 1002
34
DC7
SOFTWARE
GLY H:17 , ASN H:18 , GLY H:144 , ILE H:176 , LYS H:192
BINDING SITE FOR RESIDUE AMP H 1003
35
DC8
SOFTWARE
LYS I:192 , SER I:194 , LYS I:195
BINDING SITE FOR RESIDUE PO4 I 1002
36
DC9
SOFTWARE
GLY I:17 , ASN I:18 , ALA I:22 , ILE I:183 , LYS I:192
BINDING SITE FOR RESIDUE AMP I 1003
37
EC1
SOFTWARE
LYS J:192 , SER J:194 , LYS J:195 , SER J:196
BINDING SITE FOR RESIDUE PO4 J 1002
38
EC2
SOFTWARE
GLY J:17 , ASN J:18 , ILE J:176 , ILE J:183
BINDING SITE FOR RESIDUE AMP J 1003
39
EC3
SOFTWARE
ASN K:18 , LYS K:192 , SER K:194 , LYS K:195
BINDING SITE FOR RESIDUE PO4 K 1002
40
EC4
SOFTWARE
GLY K:17 , ASN K:18 , GLY K:21 , ALA K:22 , ILE K:176 , ALA K:181 , ARG K:182 , ILE K:183 , LYS K:192
BINDING SITE FOR RESIDUE AMP K 1003
41
EC5
SOFTWARE
LYS L:192 , SER L:194 , LYS L:195 , SER L:196
BINDING SITE FOR RESIDUE PO4 L 1002
42
EC6
SOFTWARE
GLY L:17 , ASN L:18 , ILE L:183 , LYS L:192
BINDING SITE FOR RESIDUE AMP L 1003
43
EC7
SOFTWARE
SER M:194 , LYS M:195
BINDING SITE FOR RESIDUE PO4 M 1002
44
EC8
SOFTWARE
GLY M:17 , ASN M:18 , ASP M:146 , GLN M:147
BINDING SITE FOR RESIDUE AMP M 1003
45
EC9
SOFTWARE
LYS N:192 , SER N:194 , LYS N:195
BINDING SITE FOR RESIDUE PO4 N 1002
46
FC1
SOFTWARE
GLY N:17 , ASN N:18 , ALA N:22 , ILE N:176 , ILE N:183
BINDING SITE FOR RESIDUE AMP N 1003
47
FC2
SOFTWARE
SER O:194 , LYS O:195 , SER O:196
BINDING SITE FOR RESIDUE PO4 O 1002
48
FC3
SOFTWARE
GLY O:17 , ASN O:18 , GLY O:21 , ALA O:22 , ALA O:181 , ARG O:182 , ILE O:183 , LYS O:192 , TRP O:1001
BINDING SITE FOR RESIDUE AMP O 1003
49
FC4
SOFTWARE
THR P:15 , SER P:194 , LYS P:195 , SER P:196
BINDING SITE FOR RESIDUE PO4 P 1002
50
FC5
SOFTWARE
THR P:15 , GLY P:17 , ASN P:18 , GLY P:144 , ILE P:183 , LYS P:192
BINDING SITE FOR RESIDUE AMP P 1003
51
FC6
SOFTWARE
LYS Q:192 , SER Q:194 , LYS Q:195
BINDING SITE FOR RESIDUE PO4 Q 1002
52
FC7
SOFTWARE
GLY Q:17 , ASN Q:18 , ALA Q:22 , ALA Q:181 , ARG Q:182 , ILE Q:183 , LYS Q:192
BINDING SITE FOR RESIDUE AMP Q 1003
53
FC8
SOFTWARE
THR R:15 , ASN R:18 , SER R:194 , LYS R:195
BINDING SITE FOR RESIDUE PO4 R 1002
54
FC9
SOFTWARE
GLY R:17 , ASN R:18 , GLY R:21 , PRO R:142 , ASP R:146 , ILE R:183
BINDING SITE FOR RESIDUE AMP R 1003
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: AA_TRNA_LIGASE_I (A:15-19,B:15-19,C:15-19,D:15-19,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRNA_LIGASE_I
PS00178
Aminoacyl-transfer RNA synthetases class-I signature.
SYW_GEOSE
10-19
18
A:15-19
B:15-19
C:15-19
D:15-19
E:17-19
F:16-19
G:14-19
H:15-19
I:15-19
J:15-19
K:15-19
L:15-19
M:15-19
N:15-19
O:15-19
P:15-19
Q:15-19
R:15-19
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 18)
Info
All SCOP Domains
1a: SCOP_d3fi0a_ (A:)
1b: SCOP_d3fi0e_ (E:)
1c: SCOP_d3fi0f_ (F:)
1d: SCOP_d3fi0g_ (G:)
1e: SCOP_d3fi0h_ (H:)
1f: SCOP_d3fi0i_ (I:)
1g: SCOP_d3fi0j_ (J:)
1h: SCOP_d3fi0k_ (K:)
1i: SCOP_d3fi0l_ (L:)
1j: SCOP_d3fi0m_ (M:)
1k: SCOP_d3fi0n_ (N:)
1l: SCOP_d3fi0o_ (O:)
1m: SCOP_d3fi0p_ (P:)
1n: SCOP_d3fi0q_ (Q:)
1o: SCOP_d3fi0r_ (R:)
1p: SCOP_d3fi0b_ (B:)
1q: SCOP_d3fi0c_ (C:)
1r: SCOP_d3fi0d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Class I aminoacyl-tRNA synthetases (RS), catalytic domain
(137)
Protein domain
:
Tryptophanyl-tRNA synthetase (TrpRS)
(28)
Bacillus stearothermophilus [TaxId: 1422]
(11)
1a
d3fi0a_
A:
1b
d3fi0e_
E:
1c
d3fi0f_
F:
1d
d3fi0g_
G:
1e
d3fi0h_
H:
1f
d3fi0i_
I:
1g
d3fi0j_
J:
1h
d3fi0k_
K:
1i
d3fi0l_
L:
1j
d3fi0m_
M:
1k
d3fi0n_
N:
1l
d3fi0o_
O:
1m
d3fi0p_
P:
1n
d3fi0q_
Q:
1o
d3fi0r_
R:
1p
d3fi0b_
B:
1q
d3fi0c_
C:
1r
d3fi0d_
D:
[
close SCOP info
]
CATH Domains
(2, 36)
Info
all CATH domains
1a: CATH_3fi0G01 (G:2-182,G:294-326)
1b: CATH_3fi0D01 (D:2-182,D:294-326)
1c: CATH_3fi0K01 (K:2-182,K:294-326)
1d: CATH_3fi0P01 (P:2-182,P:294-326)
1e: CATH_3fi0E01 (E:2-182,E:294-326)
1f: CATH_3fi0A01 (A:2-182,A:294-326)
1g: CATH_3fi0C01 (C:2-182,C:294-326)
1h: CATH_3fi0R01 (R:2-182,R:294-326)
1i: CATH_3fi0F01 (F:2-182,F:294-326)
1j: CATH_3fi0B01 (B:2-182,B:294-326)
1k: CATH_3fi0H01 (H:2-182,H:294-326)
1l: CATH_3fi0I01 (I:2-182,I:294-326)
1m: CATH_3fi0J01 (J:2-182,J:294-326)
1n: CATH_3fi0L01 (L:2-182,L:294-326)
1o: CATH_3fi0M01 (M:2-182,M:294-326)
1p: CATH_3fi0N01 (N:2-182,N:294-326)
1q: CATH_3fi0O01 (O:2-182,O:294-326)
1r: CATH_3fi0Q01 (Q:2-182,Q:294-326)
2a: CATH_3fi0A02 (A:183-293)
2b: CATH_3fi0B02 (B:183-293)
2c: CATH_3fi0N02 (N:183-293)
2d: CATH_3fi0O02 (O:183-293)
2e: CATH_3fi0Q02 (Q:183-293)
2f: CATH_3fi0I02 (I:183-293)
2g: CATH_3fi0K02 (K:183-293)
2h: CATH_3fi0P02 (P:183-293)
2i: CATH_3fi0E02 (E:183-293)
2j: CATH_3fi0R02 (R:183-293)
2k: CATH_3fi0C02 (C:183-293)
2l: CATH_3fi0D02 (D:183-293)
2m: CATH_3fi0F02 (F:183-293)
2n: CATH_3fi0G02 (G:183-293)
2o: CATH_3fi0H02 (H:183-293)
2p: CATH_3fi0J02 (J:183-293)
2q: CATH_3fi0L02 (L:183-293)
2r: CATH_3fi0M02 (M:183-293)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Bacillus stearothermophilus. Strain: nc1500.
(1)
1a
3fi0G01
G:2-182,G:294-326
1b
3fi0D01
D:2-182,D:294-326
1c
3fi0K01
K:2-182,K:294-326
1d
3fi0P01
P:2-182,P:294-326
1e
3fi0E01
E:2-182,E:294-326
1f
3fi0A01
A:2-182,A:294-326
1g
3fi0C01
C:2-182,C:294-326
1h
3fi0R01
R:2-182,R:294-326
1i
3fi0F01
F:2-182,F:294-326
1j
3fi0B01
B:2-182,B:294-326
1k
3fi0H01
H:2-182,H:294-326
1l
3fi0I01
I:2-182,I:294-326
1m
3fi0J01
J:2-182,J:294-326
1n
3fi0L01
L:2-182,L:294-326
1o
3fi0M01
M:2-182,M:294-326
1p
3fi0N01
N:2-182,N:294-326
1q
3fi0O01
O:2-182,O:294-326
1r
3fi0Q01
Q:2-182,Q:294-326
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Tyrosyl-Transfer RNA Synthetase
(70)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase
(70)
Bacillus stearothermophilus. Strain: nc1500.
(1)
2a
3fi0A02
A:183-293
2b
3fi0B02
B:183-293
2c
3fi0N02
N:183-293
2d
3fi0O02
O:183-293
2e
3fi0Q02
Q:183-293
2f
3fi0I02
I:183-293
2g
3fi0K02
K:183-293
2h
3fi0P02
P:183-293
2i
3fi0E02
E:183-293
2j
3fi0R02
R:183-293
2k
3fi0C02
C:183-293
2l
3fi0D02
D:183-293
2m
3fi0F02
F:183-293
2n
3fi0G02
G:183-293
2o
3fi0H02
H:183-293
2p
3fi0J02
J:183-293
2q
3fi0L02
L:183-293
2r
3fi0M02
M:183-293
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (906 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
Biol.Unit 4 (110 KB)
Header - Biol.Unit 4
Biol.Unit 5 (110 KB)
Header - Biol.Unit 5
Biol.Unit 6 (109 KB)
Header - Biol.Unit 6
Biol.Unit 7 (110 KB)
Header - Biol.Unit 7
Biol.Unit 8 (110 KB)
Header - Biol.Unit 8
Biol.Unit 9 (109 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3FI0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help