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Asym. Unit
Info
Asym.Unit (409 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (204 KB)
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(1)
Title
:
STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE A
Authors
:
Y. Jie, L. Li, N. Shaw, Y. Li, J. Song, W. Zhang, C. Xia, R. Zhang, A. Joachimiak, H. -C. Zhang, L. -X. Wang, P. Wang, Z. -J. Liu
Date
:
10 Dec 08 (Deposition) - 05 May 09 (Release) - 05 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,D,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,F (1x)
Keywords
:
Endo-A, X-Ray Structure, Glycoprotein, Man3Glcnac- Thiazoline, Glcnac-Asn, Glycosidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Yin, L. Li, N. Shaw, Y. Li, J. K. Song, W. Zhang, C. Xia, R. Zhang, A. Joachimiak, H. -C. Zhang, L. X. Wang, Z. -J. Liu, P. Wang
Structural Basis And Catalytic Mechanism For The Dual Functional Endo-Beta-N-Acetylglucosaminidase A
Plos One V. 4 E4658 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
3a: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTa)
3b: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTb)
3c: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTc)
3d: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
3
NGT
4
Ligand/Ion
3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:131 , GLU A:272 , TYR A:299 , MAN A:623 , MAN A:624 , NGT A:625
BINDING SITE FOR RESIDUE BMA A 622
02
AC2
SOFTWARE
GLY A:95 , SER A:96 , PHE A:125 , TYR A:131 , BMA A:622 , HOH A:793
BINDING SITE FOR RESIDUE MAN A 623
03
AC3
SOFTWARE
ASP A:270 , GLU A:272 , BMA A:622
BINDING SITE FOR RESIDUE MAN A 624
04
AC4
SOFTWARE
PHE A:125 , PHE A:169 , ASN A:171 , GLU A:173 , TYR A:205 , PHE A:243 , ASP A:270 , TYR A:299 , BMA A:622
BINDING SITE FOR RESIDUE NGT A 625
05
AC5
SOFTWARE
TYR B:131 , GLU B:272 , TYR B:299 , MAN B:623 , MAN B:624 , NGT B:625
BINDING SITE FOR RESIDUE BMA B 622
06
AC6
SOFTWARE
GLY B:95 , SER B:96 , PHE B:125 , TYR B:131 , BMA B:622
BINDING SITE FOR RESIDUE MAN B 623
07
AC7
SOFTWARE
ASP B:270 , GLU B:272 , BMA B:622 , HOH B:676
BINDING SITE FOR RESIDUE MAN B 624
08
AC8
SOFTWARE
LEU B:58 , TRP B:93 , PHE B:125 , PHE B:169 , ASN B:171 , GLU B:173 , TYR B:205 , PHE B:243 , TYR B:299 , BMA B:622 , HOH B:820
BINDING SITE FOR RESIDUE NGT B 625
09
AC9
SOFTWARE
TYR D:131 , GLU D:272 , TYR D:299 , MAN D:623 , MAN D:624 , NGT D:625
BINDING SITE FOR RESIDUE BMA D 622
10
BC1
SOFTWARE
GLY D:95 , SER D:96 , PHE D:125 , TYR D:131 , BMA D:622 , HOH D:699
BINDING SITE FOR RESIDUE MAN D 623
11
BC2
SOFTWARE
ASP D:270 , GLU D:272 , BMA D:622
BINDING SITE FOR RESIDUE MAN D 624
12
BC3
SOFTWARE
LEU D:58 , PHE D:125 , PHE D:169 , ASN D:171 , GLU D:173 , TYR D:205 , PHE D:243 , ASP D:270 , TYR D:299 , BMA D:622
BINDING SITE FOR RESIDUE NGT D 625
13
BC4
SOFTWARE
TYR F:131 , GLU F:272 , TYR F:299 , MAN F:623 , MAN F:624 , NGT F:625 , HOH F:713
BINDING SITE FOR RESIDUE BMA F 622
14
BC5
SOFTWARE
GLY F:95 , SER F:96 , PHE F:125 , TYR F:131 , BMA F:622 , HOH F:802
BINDING SITE FOR RESIDUE MAN F 623
15
BC6
SOFTWARE
ASP F:270 , GLU F:272 , BMA F:622
BINDING SITE FOR RESIDUE MAN F 624
16
BC7
SOFTWARE
LEU F:58 , TRP F:93 , PHE F:125 , PHE F:169 , ASN F:171 , GLU F:173 , TYR F:205 , PHE F:243 , TYR F:299 , BMA F:622
BINDING SITE FOR RESIDUE NGT F 625
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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Asym.Unit (409 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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