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3FH5
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
LEUKOTRIENE A4 HYDROLASE COMPLEXED WITH INHIBITOR (2R)-2-[(4-BENZYLPHENOXY)METHYL]PYRROLIDINE.
Authors
:
B. Mamat, D. R. Davies
Date
:
08 Dec 08 (Deposition) - 05 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lta4H, Leukotriene A4, Leukotriene B4 Biosynthesis, Peptidase, Hydrolase-Hydrolase Inhibitor Complex, Structure Based Drug Design, Leukotriene Biosynthesis, Metal-Binding, Metalloprotease, Multifunctional Enzyme, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Sandanayaka, B. Mamat, R. K. Mishra, J. Winger, M. Krohn, L. M. Zhou, M. Keyvan, L. Enache, D. Sullins, E. Onua, J. Zhang, G. Halldorsdottir H. Sigthorsdottir, A. Thorlaksdottir, G. Sigthorsson, M. Thorsteinnsdottir, D. R. Davies, L. J. Stewart, D. E. Zembower, T. Andresson, A. S. Kiselyov, J. Singh, M. E. Gurney
Discovery Of 4-[(2S)-2-{[4-(4-Chlorophenoxy)Phenoxy]Methyl}-1- Pyrrolidinyl]Butanoic Acid (Dg-051) As A Novel Leukotriene A4 Hydrolase Inhibitor Of Leukotriene B4 Biosynthesis.
J. Med. Chem. V. 53 573 2010
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Hetero Components
(6, 8)
Info
All Hetero Components
1a: (2R)-2-[(4-BENZYLPHENOXY)METHYL]PY... (24Pa)
2a: ACETATE ION (ACTa)
3a: GLYCEROL (GOLa)
4a: IMIDAZOLE (IMDa)
4b: IMIDAZOLE (IMDb)
5a: YTTERBIUM (III) ION (YBa)
5b: YTTERBIUM (III) ION (YBb)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
24P
1
Ligand/Ion
(2R)-2-[(4-BENZYLPHENOXY)METHYL]PYRROLIDINE
2
ACT
1
Ligand/Ion
ACETATE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
IMD
2
Ligand/Ion
IMIDAZOLE
5
YB
2
Ligand/Ion
YTTERBIUM (III) ION
6
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:295 , HIS A:299 , GLU A:318 , HOH A:738
BINDING SITE FOR RESIDUE ZN A 1001
2
AC2
SOFTWARE
ASP A:47 , ASP A:481 , HOH A:666 , HOH A:692 , HOH A:727 , ACT A:1005
BINDING SITE FOR RESIDUE YB A 1002
3
AC3
SOFTWARE
ASP A:175 , HOH A:1008
BINDING SITE FOR RESIDUE YB A 1003
4
AC4
SOFTWARE
ASP A:47 , ASN A:48 , ARG A:174 , ASP A:481 , HOH A:678 , HOH A:692 , HOH A:727 , YB A:1002
BINDING SITE FOR RESIDUE ACT A 1005
5
AC5
SOFTWARE
GLY A:344 , GLY A:347 , GLU A:348 , GLU A:501 , ALA A:504 , GLN A:508
BINDING SITE FOR RESIDUE IMD A 1004
6
AC6
SOFTWARE
SER A:288 , LEU A:289 , SER A:496 , HIS A:497 , ASN A:500 , ASN A:531
BINDING SITE FOR RESIDUE IMD A 1007
7
AC7
SOFTWARE
GLN A:134 , GLN A:136 , TYR A:267 , GLY A:269 , MET A:270 , TRP A:311 , PHE A:314 , VAL A:367 , PRO A:374 , ALA A:377 , TYR A:378
BINDING SITE FOR RESIDUE 24P A 611
8
AC8
SOFTWARE
PHE A:29 , ARG A:32 , TRP A:117 , LEU A:118 , HOH A:863
BINDING SITE FOR RESIDUE GOL A 1006
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051570 (Y130H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051570
Y
131
H
LKHA4_HUMAN
Polymorphism
45630737
A
Y
130
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:292-301)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
LKHA4_HUMAN
293-302
1
A:292-301
[
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Exons
(19, 19)
Info
All Exons
Exon 1.2 (A:4-52)
Exon 1.3 (A:53-96)
Exon 1.4 (A:96-136)
Exon 1.5 (A:137-159)
Exon 1.6 (A:160-194)
Exon 1.7 (A:195-212)
Exon 1.9 (A:212-236)
Exon 1.10 (A:237-283)
Exon 1.11 (A:284-291)
Exon 1.12 (A:292-315)
Exon 1.13 (A:315-352)
Exon 1.14 (A:353-401)
Exon 1.15 (A:401-435)
Exon 1.16 (A:436-459)
Exon 1.17 (A:459-477)
Exon 1.18 (A:478-509)
Exon 1.19 (A:510-537)
Exon 1.20 (A:537-572)
Exon 1.21 (A:572-609)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15
14: Boundary 1.15/1.16
15: Boundary 1.16/1.17
16: Boundary 1.17/1.18
17: Boundary 1.18/1.19
18: Boundary 1.19/1.20
19: Boundary 1.20/1.21
20: Boundary 1.21/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000228740
2
ENSE00000817988
chr12:
96429365-96429139
227
LKHA4_HUMAN
1-53
53
1
A:4-52
49
1.3
ENST00000228740
3
ENSE00000753490
chr12:
96422963-96422833
131
LKHA4_HUMAN
54-97
44
1
A:53-96
44
1.4
ENST00000228740
4
ENSE00000753489
chr12:
96421342-96421222
121
LKHA4_HUMAN
97-137
41
1
A:96-136
41
1.5
ENST00000228740
5
ENSE00000753488
chr12:
96418325-96418257
69
LKHA4_HUMAN
138-160
23
1
A:137-159
23
1.6
ENST00000228740
6
ENSE00000753487
chr12:
96416029-96415925
105
LKHA4_HUMAN
161-195
35
1
A:160-194
35
1.7
ENST00000228740
7
ENSE00000753486
chr12:
96414915-96414863
53
LKHA4_HUMAN
196-213
18
1
A:195-212
18
1.9
ENST00000228740
9
ENSE00000753485
chr12:
96413018-96412946
73
LKHA4_HUMAN
213-237
25
1
A:212-236
25
1.10
ENST00000228740
10
ENSE00000817987
chr12:
96412681-96412541
141
LKHA4_HUMAN
238-284
47
1
A:237-283
47
1.11
ENST00000228740
11
ENSE00000994202
chr12:
96411358-96411335
24
LKHA4_HUMAN
285-292
8
1
A:284-291
8
1.12
ENST00000228740
12
ENSE00000753483
chr12:
96410892-96410822
71
LKHA4_HUMAN
293-316
24
1
A:292-315
24
1.13
ENST00000228740
13
ENSE00000753482
chr12:
96409472-96409361
112
LKHA4_HUMAN
316-353
38
1
A:315-352
38
1.14
ENST00000228740
14
ENSE00000753481
chr12:
96408777-96408633
145
LKHA4_HUMAN
354-402
49
1
A:353-401
49
1.15
ENST00000228740
15
ENSE00000753480
chr12:
96407631-96407528
104
LKHA4_HUMAN
402-436
35
1
A:401-435
35
1.16
ENST00000228740
16
ENSE00000753478
chr12:
96407036-96406966
71
LKHA4_HUMAN
437-460
24
1
A:436-459
24
1.17
ENST00000228740
17
ENSE00000753477
chr12:
96402926-96402872
55
LKHA4_HUMAN
460-478
19
1
A:459-477
19
1.18
ENST00000228740
18
ENSE00000753476
chr12:
96400187-96400092
96
LKHA4_HUMAN
479-510
32
1
A:478-509
32
1.19
ENST00000228740
19
ENSE00000753475
chr12:
96397698-96397616
83
LKHA4_HUMAN
511-538
28
1
A:510-537
28
1.20
ENST00000228740
20
ENSE00001627094
chr12:
96396842-96396738
105
LKHA4_HUMAN
538-573
36
1
A:537-572
36
1.21
ENST00000228740
21
ENSE00001640843
chr12:
96394884-96394611
274
LKHA4_HUMAN
573-611
39
1
A:572-609
38
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3fh5a3 (A:461-609)
2a: SCOP_d3fh5a1 (A:4-208)
3a: SCOP_d3fh5a2 (A:209-460)
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Classes
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(
)
Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Leukotriene A4 hydrolase C-terminal domain
(45)
Protein domain
:
Leukotriene A4 hydrolase C-terminal domain
(45)
Human (Homo sapiens) [TaxId: 9606]
(45)
1a
d3fh5a3
A:461-609
Class
:
All beta proteins
(24004)
Fold
:
Zn aminopeptidase N-terminal domain
(55)
Superfamily
:
Zn aminopeptidase N-terminal domain
(55)
Family
:
Zn aminopeptidase N-terminal domain
(49)
Protein domain
:
Leukotriene A4 hydrolase N-terminal domain
(45)
Human (Homo sapiens) [TaxId: 9606]
(45)
2a
d3fh5a1
A:4-208
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Zn aminopeptidase catalytic domain
(49)
Protein domain
:
Leukotriene A4 hydrolase catalytic domain
(45)
Human (Homo sapiens) [TaxId: 9606]
(45)
3a
d3fh5a2
A:209-460
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (112 KB)
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