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3FGT
Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
TWO CHAIN FORM OF THE 66.3 KDA PROTEIN FROM MOUSE LACKING THE LINKER PEPTIDE
Authors
:
K. Lakomek, A. Dickmanns, R. Ficner
Date
:
08 Dec 08 (Deposition) - 15 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha Beta, Glycosylated, Disulphide Bonds, N-Terminal Nucleophile Hydrolase Fold, Two Chain Form, Glycoprotein, Hydrolase, Lipid Degradation, Lysosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Lakomek, A. Dickmanns, M. Kettwig, H. Urlaub, R. Ficner, T. Luebke
Initial Insight Into The Function Of The Lysosomal 66. 3 Kda Protein From Mouse By Means Of X-Ray Crystallography
Bmc Struct. Biol. V. 9 56 2009
(for further references see the
PDB file header
)
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEa)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: SODIUM ION (NAa)
6a: CYSTEINESULFONIC ACID (OCSa)
7a: TETRAETHYLENE GLYCOL (PG4a)
7b: TETRAETHYLENE GLYCOL (PG4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
7PE
1
Ligand/Ion
2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
2
ACT
3
Ligand/Ion
ACETATE ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
OCS
1
Mod. Amino Acid
CYSTEINESULFONIC ACID
7
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:12 , ASN A:115 , SER A:117 , PHE A:207 , THR A:209 , HOH A:272 , HOH A:302
BINDING SITE FOR RESIDUE NAG A 11
02
AC2
SOFTWARE
NAG A:11 , LEU A:71 , PHE A:207
BINDING SITE FOR RESIDUE NAG A 12
03
AC3
SOFTWARE
LYS A:159 , ASN A:236
BINDING SITE FOR RESIDUE NAG A 21
04
AC4
SOFTWARE
HOH B:641
BINDING SITE FOR RESIDUE ACT A 249
05
AC5
SOFTWARE
ARG A:99 , GLU A:100 , HOH A:327 , PHE B:586
BINDING SITE FOR RESIDUE GOL A 3
06
AC6
SOFTWARE
GLU A:165 , LEU A:168 , GLU A:169 , GLN A:172 , PHE A:212 , THR A:213 , ILE A:214 , LYS A:215 , PRO A:216
BINDING SITE FOR RESIDUE PG4 A 23
07
AC7
SOFTWARE
TYR A:146 , CYS A:147 , GLU A:151 , LYS A:237 , HOH A:463
BINDING SITE FOR RESIDUE ACT A 1
08
AC8
SOFTWARE
HOH B:85 , ASN B:441 , GLN B:446 , HOH B:698
BINDING SITE FOR RESIDUE NAG B 31
09
AC9
SOFTWARE
TRP A:170 , ARG A:173 , GLU A:174 , LEU A:177 , HOH B:120 , HOH B:138 , PRO B:257 , HOH B:616 , HOH B:640
BINDING SITE FOR RESIDUE ACT B 12
10
BC1
SOFTWARE
HOH B:221 , ASN B:432 , GLU B:507 , ARG B:531 , HIS B:533
BINDING SITE FOR RESIDUE GOL B 1
11
BC2
SOFTWARE
HOH B:104 , HOH B:220 , ASP B:515 , PHE B:565 , GLN B:566 , LYS B:569 , SER B:570 , PRO B:571
BINDING SITE FOR RESIDUE GOL B 2
12
BC3
SOFTWARE
HOH B:189 , GLY B:321 , GLY B:323 , TYR B:388 , LYS B:389 , PHE B:391 , LEU B:392 , PRO B:393 , PHE B:543 , HOH B:627
BINDING SITE FOR RESIDUE PG4 B 22
13
BC4
SOFTWARE
ARG B:373 , ALA B:479 , ARG B:482 , LEU B:483 , 7PE B:607 , HOH B:631
BINDING SITE FOR RESIDUE GOL B 5
14
BC5
SOFTWARE
GLU B:293 , TYR B:294 , PRO B:295 , PRO B:493 , HOH B:687
BINDING SITE FOR RESIDUE GOL B 4
15
BC6
SOFTWARE
OCS B:249 , ASP B:315 , GLU B:328 , THR B:330 , TYR B:379
BINDING SITE FOR RESIDUE NA B 606
16
BC7
SOFTWARE
GOL B:5 , HOH B:124 , HOH B:146 , GLU B:288 , ASP B:369 , ARG B:469 , ARG B:482 , TYR B:486 , GLN B:561
BINDING SITE FOR RESIDUE 7PE B 607
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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