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3FGO
Biol. Unit 1
Info
Asym.Unit (672 KB)
Biol.Unit 1 (337 KB)
Biol.Unit 2 (334 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E2 MAGNESIUM FLUORIDE COMPLEX OF THE (SR) CA2+-ATPASE WITH BOUND CPA AND AMPPCP
Authors
:
M. Laursen, M. Bublitz, K. Moncoq, C. Olesen, J. V. Moller, H. S. Young, P. Nissen, J. P. Morth
Date
:
08 Dec 08 (Deposition) - 07 Apr 09 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Calcium Pump, Serca, Nonhydrolyzable Atp Analog, P-Type- Atpase, Phosphorylation, Cyclopiazonic Acid, Cpa, Alternative Splicing, Atp-Binding, Calcium, Calcium Transport, Endoplasmic Reticulum, Hydrolase, Ion Transport, Magnesium, Membrane, Metal-Binding, Nucleotide-Binding, Phosphoprotein, Sarcoplasmic Reticulum, Transmembrane, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Laursen, M. Bublitz, K. Moncoq, C. Olesen, J. V. Moeller, H. S. Young, P. Nissen, J. P. Morth
Cyclopiazonic Acid Is Complexed To A Divalent Metal Ion When Bound To The Sarcoplasmic Reticulum Ca2+-Atpase.
J. Biol. Chem. 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
3a: (6AR,11AS,11BR)-10-ACETYL-9-HYDROX... (CZAa)
3b: (6AR,11AS,11BR)-10-ACETYL-9-HYDROX... (CZAb)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: TETRAFLUOROMAGNESATE(2-) (MF4a)
5b: TETRAFLUOROMAGNESATE(2-) (MF4b)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
7a: MANGANESE (II) ION (MNa)
7b: MANGANESE (II) ION (MNb)
7c: MANGANESE (II) ION (MNc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
ACT
2
Ligand/Ion
ACETATE ION
3
CZA
1
Ligand/Ion
(6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE
4
K
-1
Ligand/Ion
POTASSIUM ION
5
MF4
1
Ligand/Ion
TETRAFLUOROMAGNESATE(2-)
6
MG
-1
Ligand/Ion
MAGNESIUM ION
7
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , MF4 A:1003 , HOH A:1073 , HOH A:1074
BINDING SITE FOR RESIDUE MG A1002
2
AC2
SOFTWARE
THR A:181 , GLY A:182 , GLU A:183 , ASP A:351 , LYS A:352 , THR A:353 , THR A:625 , GLY A:626 , ASP A:627 , LYS A:684 , ASN A:706 , MG A:1002 , HOH A:1073 , HOH A:1074
BINDING SITE FOR RESIDUE MF4 A1003
3
AC3
SOFTWARE
LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732
BINDING SITE FOR RESIDUE K A1004
4
AC4
SOFTWARE
GLN A:56 , ASP A:59 , LEU A:61 , VAL A:62 , LEU A:98 , ASN A:101 , ILE A:307 , GLU A:309 , LEU A:311 , MN A:1006 , HOH A:1133 , HOH A:1228
BINDING SITE FOR RESIDUE CZA A1005
5
AC5
SOFTWARE
GLN A:56 , CZA A:1005 , HOH A:1072 , HOH A:1133 , HOH A:1228
BINDING SITE FOR RESIDUE MN A1006
6
AC6
SOFTWARE
ARG A:174 , ILE A:188 , LYS A:205 , PHE A:487 , LYS A:492 , MET A:494 , LYS A:515 , GLY A:516 , LEU A:562 , ASN A:628 , MN A:1008 , HOH A:1075 , HOH A:1094 , HOH A:1097 , HOH A:1145 , HOH A:1164 , HOH A:1265
BINDING SITE FOR RESIDUE ACP A1007
7
AC7
SOFTWARE
ACP A:1007
BINDING SITE FOR RESIDUE MN A1008
8
AC8
SOFTWARE
SER A:170 , THR A:172 , ALA A:216 , GLU A:486 , HOH A:1139 , HOH A:1256
BINDING SITE FOR RESIDUE ACT A3001
9
AC9
SOFTWARE
ASN A:39 , LEU A:41 , GLU A:123 , PRO A:160 , SER A:210 , GLY A:227 , THR A:230 , ILE A:232 , HOH A:1066
BINDING SITE FOR RESIDUE ACT A3002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
1
A:351-357
-
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d3fgoa2 (A:125-239)
1b: SCOP_d3fgob2 (B:125-239)
2a: SCOP_d3fgoa4 (A:361-599)
2b: SCOP_d3fgob4 (B:361-599)
3a: SCOP_d3fgoa3 (A:344-360,A:600-750)
3b: SCOP_d3fgob3 (B:344-360,B:600-750)
4a: SCOP_d3fgoa1 (A:1-124,A:240-343,A:751-994)
4b: SCOP_d3fgob1 (B:1-124,B:240-343,B:751-994)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Calcium ATPase, transduction domain A
(37)
Family
:
Calcium ATPase, transduction domain A
(37)
Protein domain
:
Calcium ATPase, transduction domain A
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
1a
d3fgoa2
A:125-239
1b
d3fgob2
B:125-239
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Superfamily
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Family
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Protein domain
:
Calcium ATPase
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
2a
d3fgoa4
A:361-599
2b
d3fgob4
B:361-599
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Meta-cation ATPase, catalytic domain P
(38)
Protein domain
:
Calcium ATPase, catalytic domain P
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
3a
d3fgoa3
A:344-360,A:600-750
3b
d3fgob3
B:344-360,B:600-750
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Calcium ATPase, transmembrane domain M
(37)
Superfamily
:
Calcium ATPase, transmembrane domain M
(37)
Family
:
Calcium ATPase, transmembrane domain M
(37)
Protein domain
:
Calcium ATPase, transmembrane domain M
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
4a
d3fgoa1
A:1-124,A:240-343,A:751-994
4b
d3fgob1
B:1-124,B:240-343,B:751-994
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_3fgoA04 (A:359-602)
1b: CATH_3fgoB04 (B:359-602)
2a: CATH_3fgoA03 (A:346-358,A:603-745)
2b: CATH_3fgoB03 (B:346-358,B:603-745)
3a: CATH_3fgoA02 (A:55-112,A:241-345,A:746-994)
3b: CATH_3fgoB02 (B:55-112,B:241-345,B:746-994)
4a: CATH_3fgoA01 (A:12-54,A:113-240)
4b: CATH_3fgoB01 (B:12-54,B:113-240)
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Topologies
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Rabbit (Oryctolagus cuniculus)
(31)
1a
3fgoA04
A:359-602
1b
3fgoB04
B:359-602
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Rabbit (Oryctolagus cuniculus)
(31)
2a
3fgoA03
A:346-358,A:603-745
2b
3fgoB03
B:346-358,B:603-745
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Calcium-transporting ATPase, transmembrane domain
(36)
Homologous Superfamily
:
Calcium-transporting ATPase, transmembrane domain
(36)
Rabbit (Oryctolagus cuniculus)
(31)
3a
3fgoA02
A:55-112,A:241-345,A:746-994
3b
3fgoB02
B:55-112,B:241-345,B:746-994
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Rabbit (Oryctolagus cuniculus)
(31)
4a
3fgoA01
A:12-54,A:113-240
4b
3fgoB01
B:12-54,B:113-240
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (672 KB)
Header - Asym.Unit
Biol.Unit 1 (337 KB)
Header - Biol.Unit 1
Biol.Unit 2 (334 KB)
Header - Biol.Unit 2
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