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3FG4
Biol. Unit 4
Info
Asym.Unit (489 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (122 KB)
Biol.Unit 3 (128 KB)
Biol.Unit 4 (124 KB)
Biol.Unit 5 (476 KB)
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Title
:
CRYSTAL STRUCTURE OF DELTA413-417:GS I805A LOX
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
04 Dec 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Lipoxygenase, Arichidonic Metabolism, Dioxygenase, Fatty Acid Biosynthesis, Heme, Iron, Lipid Synthesis, Lyase, Membrane, Metal- Binding, Multifunctional Enzyme, Oxidoreductase, Oxylipin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, N. C. Gilbert, S. G. Bartlett, W. Boeglin, A. R. Brash, M. E. Newcomer
The 1. 85 A Structure Of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity.
Biochemistry V. 48 7906 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 9)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
1b: ARACHIDONIC ACID (ACDb)
1c: ARACHIDONIC ACID (ACDc)
1d: ARACHIDONIC ACID (ACDd)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
2k: ACETIC ACID (ACYk)
2l: ACETIC ACID (ACYl)
2m: ACETIC ACID (ACYm)
2n: ACETIC ACID (ACYn)
2o: ACETIC ACID (ACYo)
2p: ACETIC ACID (ACYp)
2q: ACETIC ACID (ACYq)
2r: ACETIC ACID (ACYr)
2s: ACETIC ACID (ACYs)
2t: ACETIC ACID (ACYt)
2u: ACETIC ACID (ACYu)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
5a: FE (II) ION (FE2a)
5b: FE (II) ION (FE2b)
5c: FE (II) ION (FE2c)
5d: FE (II) ION (FE2d)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
6s: GLYCEROL (GOLs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
1
Ligand/Ion
ARACHIDONIC ACID
2
ACY
4
Ligand/Ion
ACETIC ACID
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
FE2
1
Ligand/Ion
FE (II) ION
6
GOL
3
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: BC6 (SOFTWARE)
02: DC8 (SOFTWARE)
03: FC1 (SOFTWARE)
04: FC4 (SOFTWARE)
05: FC5 (SOFTWARE)
06: FC6 (SOFTWARE)
07: FC7 (SOFTWARE)
08: FC8 (SOFTWARE)
09: FC9 (SOFTWARE)
10: GC1 (SOFTWARE)
11: GC2 (SOFTWARE)
12: GC3 (SOFTWARE)
13: GC4 (SOFTWARE)
14: GC5 (SOFTWARE)
15: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
GLU A:572 , ASN A:573 , ASP A:575 , SER A:576 , ASP A:579 , HOH A:1404 , ARG D:585
BINDING SITE FOR RESIDUE GOL A 2304
02
DC8
SOFTWARE
HOH C:97 , GLU C:424 , HOH C:1074 , HOH C:1075 , ASN D:1028 , HOH D:1068 , HOH D:1079
BINDING SITE FOR RESIDUE CA C 1502
03
FC1
SOFTWARE
ASP C:1032 , GLU C:1035 , HOH C:1163 , HOH C:1345 , ASP D:391 , ALA D:392 , GLY D:413 , HOH D:1094
BINDING SITE FOR RESIDUE GOL C 2305
04
FC4
SOFTWARE
ASN C:1028 , HOH C:1109 , HOH D:415 , HOH D:416 , GLU D:424 , HOH D:1069 , HOH D:1070
BINDING SITE FOR RESIDUE CA C 1067
05
FC5
SOFTWARE
HIS D:757 , HIS D:762 , HIS D:943 , ASN D:947 , ILE D:1066 , HOH D:1078
BINDING SITE FOR RESIDUE FE2 D 1500
06
FC6
SOFTWARE
HIS D:387 , GLY D:389 , ASP D:452 , ASP D:454 , HOH D:1085
BINDING SITE FOR RESIDUE CA D 1501
07
FC7
SOFTWARE
HIS D:762 , ASP D:797
BINDING SITE FOR RESIDUE ACD D 2001
08
FC8
SOFTWARE
HIS D:534 , SER D:548 , TYR D:551 , GLN D:552
BINDING SITE FOR RESIDUE ACY D 2201
09
FC9
SOFTWARE
ASP D:578 , ALA D:596 , TRP D:599
BINDING SITE FOR RESIDUE ACY D 2202
10
GC1
SOFTWARE
PHE D:605 , GLN D:608 , GLU D:748 , ASN D:959
BINDING SITE FOR RESIDUE ACY D 2203
11
GC2
SOFTWARE
LEU D:562 , SER D:566 , LYS D:987 , SER D:988 , ALA D:991
BINDING SITE FOR RESIDUE ACY D 2204
12
GC3
SOFTWARE
ALA C:392 , ASP C:411 , LYS C:412 , GLY C:413 , HOH C:1415 , ASP D:1032 , GLU D:1035 , HOH D:1203
BINDING SITE FOR RESIDUE GOL D 2303
13
GC4
SOFTWARE
GLY D:876 , GLU D:926 , LYS D:929 , HOH D:1136
BINDING SITE FOR RESIDUE GOL D 1067
14
GC5
SOFTWARE
ASN D:573 , ASP D:575 , SER D:576 , ASP D:579 , HOH D:1258
BINDING SITE FOR RESIDUE GOL D 2304
15
GC6
SOFTWARE
ALA D:490 , TRP D:1018 , GLU D:1019 , ASP D:1020
BINDING SITE FOR RESIDUE CL D 2401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (D:374-493)
2: LIPOXYGENASE_3 (D:491-1066)
3: LIPOXYGENASE_1 (D:752-766)
4: LIPOXYGENASE_2 (D:779-789)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
AOSL_PLEHO
374-493
1
-
-
-
D:374-493
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
AOSL_PLEHO
491-1066
1
-
-
-
D:491-1066
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
AOSL_PLEHO
752-766
1
-
-
-
D:752-766
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
AOSL_PLEHO
779-789
1
-
-
-
D:779-789
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (489 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
Biol.Unit 3 (128 KB)
Header - Biol.Unit 3
Biol.Unit 4 (124 KB)
Header - Biol.Unit 4
Biol.Unit 5 (476 KB)
Header - Biol.Unit 5
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