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3FG4
Biol. Unit 3
Info
Asym.Unit (489 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (122 KB)
Biol.Unit 3 (128 KB)
Biol.Unit 4 (124 KB)
Biol.Unit 5 (476 KB)
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Title
:
CRYSTAL STRUCTURE OF DELTA413-417:GS I805A LOX
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
04 Dec 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Lipoxygenase, Arichidonic Metabolism, Dioxygenase, Fatty Acid Biosynthesis, Heme, Iron, Lipid Synthesis, Lyase, Membrane, Metal- Binding, Multifunctional Enzyme, Oxidoreductase, Oxylipin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, N. C. Gilbert, S. G. Bartlett, W. Boeglin, A. R. Brash, M. E. Newcomer
The 1. 85 A Structure Of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity.
Biochemistry V. 48 7906 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 13)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
1b: ARACHIDONIC ACID (ACDb)
1c: ARACHIDONIC ACID (ACDc)
1d: ARACHIDONIC ACID (ACDd)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
2k: ACETIC ACID (ACYk)
2l: ACETIC ACID (ACYl)
2m: ACETIC ACID (ACYm)
2n: ACETIC ACID (ACYn)
2o: ACETIC ACID (ACYo)
2p: ACETIC ACID (ACYp)
2q: ACETIC ACID (ACYq)
2r: ACETIC ACID (ACYr)
2s: ACETIC ACID (ACYs)
2t: ACETIC ACID (ACYt)
2u: ACETIC ACID (ACYu)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
5a: FE (II) ION (FE2a)
5b: FE (II) ION (FE2b)
5c: FE (II) ION (FE2c)
5d: FE (II) ION (FE2d)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
6s: GLYCEROL (GOLs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
1
Ligand/Ion
ARACHIDONIC ACID
2
ACY
6
Ligand/Ion
ACETIC ACID
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
FE2
1
Ligand/Ion
FE (II) ION
6
GOL
5
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: DC6 (SOFTWARE)
02: DC7 (SOFTWARE)
03: DC8 (SOFTWARE)
04: DC9 (SOFTWARE)
05: EC1 (SOFTWARE)
06: EC2 (SOFTWARE)
07: EC3 (SOFTWARE)
08: EC4 (SOFTWARE)
09: EC5 (SOFTWARE)
10: EC6 (SOFTWARE)
11: EC7 (SOFTWARE)
12: EC8 (SOFTWARE)
13: EC9 (SOFTWARE)
14: FC1 (SOFTWARE)
15: FC2 (SOFTWARE)
16: FC3 (SOFTWARE)
17: FC4 (SOFTWARE)
18: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
DC6
SOFTWARE
HIS C:757 , HIS C:762 , HIS C:943 , ASN C:947 , ILE C:1066 , HOH C:1099
BINDING SITE FOR RESIDUE FE2 C 1500
02
DC7
SOFTWARE
HIS C:387 , GLY C:389 , ASP C:452 , ASP C:454 , HOH C:1206
BINDING SITE FOR RESIDUE CA C 1501
03
DC8
SOFTWARE
HOH C:97 , GLU C:424 , HOH C:1074 , HOH C:1075 , ASN D:1028 , HOH D:1068 , HOH D:1079
BINDING SITE FOR RESIDUE CA C 1502
04
DC9
SOFTWARE
LEU C:758 , GLY C:800
BINDING SITE FOR RESIDUE ACD C 2001
05
EC1
SOFTWARE
PHE C:605 , GLN C:608 , PHE C:609 , GLU C:748 , ASN C:959
BINDING SITE FOR RESIDUE ACY C 2201
06
EC2
SOFTWARE
LEU C:562 , GLY C:565 , SER C:566 , THR C:569 , ALA C:991 , HOH C:1200
BINDING SITE FOR RESIDUE ACY C 2202
07
EC3
SOFTWARE
GLN C:753 , SER C:814 , ALA C:993 , VAL C:997
BINDING SITE FOR RESIDUE ACY C 2203
08
EC4
SOFTWARE
ASP C:578 , HIS C:581 , ALA C:596 , TRP C:599 , HIS C:600 , HOH C:1245
BINDING SITE FOR RESIDUE ACY C 2204
09
EC5
SOFTWARE
HIS C:534 , SER C:548 , GLN C:552
BINDING SITE FOR RESIDUE ACY C 2205
10
EC6
SOFTWARE
PHE C:1003 , TYR C:1009 , GLU C:1058
BINDING SITE FOR RESIDUE ACY C 2206
11
EC7
SOFTWARE
ASN C:636 , LEU C:639 , ASP C:640 , ARG C:641 , GLY C:642 , LYS C:643 , ASN C:644
BINDING SITE FOR RESIDUE GOL C 2301
12
EC8
SOFTWARE
GLY C:876 , ILE C:879 , ALA C:880 , GLU C:926 , LYS C:929
BINDING SITE FOR RESIDUE GOL C 2302
13
EC9
SOFTWARE
LYS B:890 , GLN B:896 , SER B:921 , PHE B:922 , GLU B:923 , HOH C:126 , HOH C:209 , LEU C:624 , SER C:626
BINDING SITE FOR RESIDUE GOL C 2304
14
FC1
SOFTWARE
ASP C:1032 , GLU C:1035 , HOH C:1163 , HOH C:1345 , ASP D:391 , ALA D:392 , GLY D:413 , HOH D:1094
BINDING SITE FOR RESIDUE GOL C 2305
15
FC2
SOFTWARE
ASN C:573 , TRP C:574 , ASP C:575 , SER C:576 , ASP C:579
BINDING SITE FOR RESIDUE GOL C 2306
16
FC3
SOFTWARE
THR C:405 , ASP C:406 , PHE C:431
BINDING SITE FOR RESIDUE CL C 2401
17
FC4
SOFTWARE
ASN C:1028 , HOH C:1109 , HOH D:415 , HOH D:416 , GLU D:424 , HOH D:1069 , HOH D:1070
BINDING SITE FOR RESIDUE CA C 1067
18
GC3
SOFTWARE
ALA C:392 , ASP C:411 , LYS C:412 , GLY C:413 , HOH C:1415 , ASP D:1032 , GLU D:1035 , HOH D:1203
BINDING SITE FOR RESIDUE GOL D 2303
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (C:374-493)
2: LIPOXYGENASE_3 (C:491-1066)
3: LIPOXYGENASE_1 (C:752-766)
4: LIPOXYGENASE_2 (C:779-789)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
AOSL_PLEHO
374-493
1
-
-
C:374-493
-
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
AOSL_PLEHO
491-1066
1
-
-
C:491-1066
-
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
AOSL_PLEHO
752-766
1
-
-
C:752-766
-
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
AOSL_PLEHO
779-789
1
-
-
C:779-789
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
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Chain C
Asymmetric Unit 1
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Asym.Unit (489 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
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Biol.Unit 3 (128 KB)
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Biol.Unit 4 (124 KB)
Header - Biol.Unit 4
Biol.Unit 5 (476 KB)
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