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3FG4
Asym. Unit
Info
Asym.Unit (489 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (122 KB)
Biol.Unit 3 (128 KB)
Biol.Unit 4 (124 KB)
Biol.Unit 5 (476 KB)
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Title
:
CRYSTAL STRUCTURE OF DELTA413-417:GS I805A LOX
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
04 Dec 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Lipoxygenase, Arichidonic Metabolism, Dioxygenase, Fatty Acid Biosynthesis, Heme, Iron, Lipid Synthesis, Lyase, Membrane, Metal- Binding, Multifunctional Enzyme, Oxidoreductase, Oxylipin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, N. C. Gilbert, S. G. Bartlett, W. Boeglin, A. R. Brash, M. E. Newcomer
The 1. 85 A Structure Of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity.
Biochemistry V. 48 7906 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 60)
Info
All Hetero Components
1a: ARACHIDONIC ACID (ACDa)
1b: ARACHIDONIC ACID (ACDb)
1c: ARACHIDONIC ACID (ACDc)
1d: ARACHIDONIC ACID (ACDd)
2a: ACETIC ACID (ACYa)
2b: ACETIC ACID (ACYb)
2c: ACETIC ACID (ACYc)
2d: ACETIC ACID (ACYd)
2e: ACETIC ACID (ACYe)
2f: ACETIC ACID (ACYf)
2g: ACETIC ACID (ACYg)
2h: ACETIC ACID (ACYh)
2i: ACETIC ACID (ACYi)
2j: ACETIC ACID (ACYj)
2k: ACETIC ACID (ACYk)
2l: ACETIC ACID (ACYl)
2m: ACETIC ACID (ACYm)
2n: ACETIC ACID (ACYn)
2o: ACETIC ACID (ACYo)
2p: ACETIC ACID (ACYp)
2q: ACETIC ACID (ACYq)
2r: ACETIC ACID (ACYr)
2s: ACETIC ACID (ACYs)
2t: ACETIC ACID (ACYt)
2u: ACETIC ACID (ACYu)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
5a: FE (II) ION (FE2a)
5b: FE (II) ION (FE2b)
5c: FE (II) ION (FE2c)
5d: FE (II) ION (FE2d)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
6g: GLYCEROL (GOLg)
6h: GLYCEROL (GOLh)
6i: GLYCEROL (GOLi)
6j: GLYCEROL (GOLj)
6k: GLYCEROL (GOLk)
6l: GLYCEROL (GOLl)
6m: GLYCEROL (GOLm)
6n: GLYCEROL (GOLn)
6o: GLYCEROL (GOLo)
6p: GLYCEROL (GOLp)
6q: GLYCEROL (GOLq)
6r: GLYCEROL (GOLr)
6s: GLYCEROL (GOLs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACD
4
Ligand/Ion
ARACHIDONIC ACID
2
ACY
21
Ligand/Ion
ACETIC ACID
3
CA
8
Ligand/Ion
CALCIUM ION
4
CL
4
Ligand/Ion
CHLORIDE ION
5
FE2
4
Ligand/Ion
FE (II) ION
6
GOL
19
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(60, 60)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:315 , HIS A:757 , HIS A:762 , HIS A:943 , ASN A:947 , ILE A:1066
BINDING SITE FOR RESIDUE FE2 A 1500
02
AC2
SOFTWARE
HOH A:241 , HIS A:387 , GLY A:389 , ASP A:452 , ASP A:454
BINDING SITE FOR RESIDUE CA A 1501
03
AC3
SOFTWARE
HOH A:226 , HOH A:247 , HOH A:343 , HOH A:344 , GLU A:424 , HOH B:345 , ASN B:1028
BINDING SITE FOR RESIDUE CA A 1502
04
AC4
SOFTWARE
GLY A:800
BINDING SITE FOR RESIDUE ACD A 2001
05
AC5
SOFTWARE
PHE A:605 , GLN A:608 , PHE A:609 , GLU A:748 , HIS A:953 , ASN A:959
BINDING SITE FOR RESIDUE ACY A 2201
06
AC6
SOFTWARE
SER A:548 , TYR A:551 , GLN A:552
BINDING SITE FOR RESIDUE ACY A 2202
07
AC7
SOFTWARE
HOH A:98 , GLN A:753 , SER A:814 , TYR A:954 , ALA A:993 , VAL A:997
BINDING SITE FOR RESIDUE ACY A 2203
08
AC8
SOFTWARE
ASN A:636 , ALA A:637 , LEU A:639 , GOL A:2301
BINDING SITE FOR RESIDUE ACY A 2204
09
AC9
SOFTWARE
TYR A:1009 , GLU A:1058 , ARG A:1059
BINDING SITE FOR RESIDUE ACY A 2205
10
BC1
SOFTWARE
LEU A:562 , SER A:566 , THR A:569 , ALA A:991
BINDING SITE FOR RESIDUE ACY A 2206
11
BC2
SOFTWARE
GLY A:707 , HOH A:1075
BINDING SITE FOR RESIDUE ACY A 2207
12
BC3
SOFTWARE
ASN A:636 , LEU A:639 , ASP A:640 , ARG A:641 , GLY A:642 , LYS A:643 , ASN A:644 , ACY A:2204
BINDING SITE FOR RESIDUE GOL A 2301
13
BC4
SOFTWARE
GLY A:876 , ILE A:879 , ALA A:880 , GLU A:926 , LYS A:929 , HOH A:1275
BINDING SITE FOR RESIDUE GOL A 2302
14
BC5
SOFTWARE
HOH A:52 , VAL A:661 , PHE A:751 , ASN A:755 , ARG A:760 , CYS A:829 , GLU A:832
BINDING SITE FOR RESIDUE GOL A 2303
15
BC6
SOFTWARE
GLU A:572 , ASN A:573 , ASP A:575 , SER A:576 , ASP A:579 , HOH A:1404 , ARG D:585
BINDING SITE FOR RESIDUE GOL A 2304
16
BC7
SOFTWARE
GLY A:383 , ASP A:384 , ARG A:385 , PHE A:456 , ASN A:458 , SER A:1014 , ALA A:1015 , HOH A:1236 , HOH A:1324 , ASP B:384 , GLY B:421
BINDING SITE FOR RESIDUE GOL A 2305
17
BC8
SOFTWARE
ASP A:862 , ASP A:863 , LYS A:1040 , HOH A:1172
BINDING SITE FOR RESIDUE GOL A 2306
18
BC9
SOFTWARE
ASP A:1032 , GLU A:1035 , HOH A:1107 , HOH A:1578 , HOH B:340 , ASP B:411 , GLY B:413
BINDING SITE FOR RESIDUE GOL A 2307
19
CC1
SOFTWARE
GLU A:489 , ALA A:490 , GLU A:1019 , ASP A:1020 , HOH A:1101
BINDING SITE FOR RESIDUE CL A 2401
20
CC2
SOFTWARE
HOH A:20 , HOH A:330 , ASN A:1028 , HOH B:331 , HOH B:332 , HOH B:333 , GLU B:424
BINDING SITE FOR RESIDUE CA A 1067
21
CC3
SOFTWARE
HOH A:242 , ASP A:391 , ALA A:392 , ASP A:411 , GLY A:413 , SER A:414 , PHE A:418 , HOH A:1116 , HOH A:1122 , HOH A:1562 , ASP B:1032 , GLU B:1035
BINDING SITE FOR RESIDUE GOL A 1068
22
CC4
SOFTWARE
HOH B:361 , HIS B:757 , HIS B:762 , HIS B:943 , ASN B:947 , ILE B:1066
BINDING SITE FOR RESIDUE FE2 B 1500
23
CC5
SOFTWARE
HOH B:346 , HIS B:387 , GLY B:389 , ASP B:452 , ASP B:454
BINDING SITE FOR RESIDUE CA B 1501
24
CC6
SOFTWARE
HIS B:762 , ASP B:797 , GLY B:800 , ARG B:801
BINDING SITE FOR RESIDUE ACD B 2001
25
CC7
SOFTWARE
PHE B:605 , GLN B:608 , PHE B:609 , GLU B:748 , ASN B:959
BINDING SITE FOR RESIDUE ACY B 2201
26
CC8
SOFTWARE
GLU B:1058
BINDING SITE FOR RESIDUE ACY B 2202
27
CC9
SOFTWARE
LEU B:562 , GLY B:565 , SER B:566 , THR B:569 , ALA B:991
BINDING SITE FOR RESIDUE ACY B 2203
28
DC1
SOFTWARE
SER B:548 , GLN B:552
BINDING SITE FOR RESIDUE ACY B 2204
29
DC2
SOFTWARE
GLY B:876 , ALA B:880 , ARG B:925 , GLU B:926 , LYS B:929
BINDING SITE FOR RESIDUE GOL B 2301
30
DC3
SOFTWARE
ASN B:573 , ASP B:575 , ASP B:579 , HOH B:1111
BINDING SITE FOR RESIDUE GOL B 2303
31
DC4
SOFTWARE
VAL B:661 , ASN B:755 , ARG B:760 , CYS B:829 , GLU B:832 , HOH B:1101
BINDING SITE FOR RESIDUE GOL B 2304
32
DC5
SOFTWARE
ALA B:490 , TRP B:1018 , GLU B:1019 , ASP B:1020
BINDING SITE FOR RESIDUE CL B 2401
33
DC6
SOFTWARE
HIS C:757 , HIS C:762 , HIS C:943 , ASN C:947 , ILE C:1066 , HOH C:1099
BINDING SITE FOR RESIDUE FE2 C 1500
34
DC7
SOFTWARE
HIS C:387 , GLY C:389 , ASP C:452 , ASP C:454 , HOH C:1206
BINDING SITE FOR RESIDUE CA C 1501
35
DC8
SOFTWARE
HOH C:97 , GLU C:424 , HOH C:1074 , HOH C:1075 , ASN D:1028 , HOH D:1068 , HOH D:1079
BINDING SITE FOR RESIDUE CA C 1502
36
DC9
SOFTWARE
LEU C:758 , GLY C:800
BINDING SITE FOR RESIDUE ACD C 2001
37
EC1
SOFTWARE
PHE C:605 , GLN C:608 , PHE C:609 , GLU C:748 , ASN C:959
BINDING SITE FOR RESIDUE ACY C 2201
38
EC2
SOFTWARE
LEU C:562 , GLY C:565 , SER C:566 , THR C:569 , ALA C:991 , HOH C:1200
BINDING SITE FOR RESIDUE ACY C 2202
39
EC3
SOFTWARE
GLN C:753 , SER C:814 , ALA C:993 , VAL C:997
BINDING SITE FOR RESIDUE ACY C 2203
40
EC4
SOFTWARE
ASP C:578 , HIS C:581 , ALA C:596 , TRP C:599 , HIS C:600 , HOH C:1245
BINDING SITE FOR RESIDUE ACY C 2204
41
EC5
SOFTWARE
HIS C:534 , SER C:548 , GLN C:552
BINDING SITE FOR RESIDUE ACY C 2205
42
EC6
SOFTWARE
PHE C:1003 , TYR C:1009 , GLU C:1058
BINDING SITE FOR RESIDUE ACY C 2206
43
EC7
SOFTWARE
ASN C:636 , LEU C:639 , ASP C:640 , ARG C:641 , GLY C:642 , LYS C:643 , ASN C:644
BINDING SITE FOR RESIDUE GOL C 2301
44
EC8
SOFTWARE
GLY C:876 , ILE C:879 , ALA C:880 , GLU C:926 , LYS C:929
BINDING SITE FOR RESIDUE GOL C 2302
45
EC9
SOFTWARE
LYS B:890 , GLN B:896 , SER B:921 , PHE B:922 , GLU B:923 , HOH C:126 , HOH C:209 , LEU C:624 , SER C:626
BINDING SITE FOR RESIDUE GOL C 2304
46
FC1
SOFTWARE
ASP C:1032 , GLU C:1035 , HOH C:1163 , HOH C:1345 , ASP D:391 , ALA D:392 , GLY D:413 , HOH D:1094
BINDING SITE FOR RESIDUE GOL C 2305
47
FC2
SOFTWARE
ASN C:573 , TRP C:574 , ASP C:575 , SER C:576 , ASP C:579
BINDING SITE FOR RESIDUE GOL C 2306
48
FC3
SOFTWARE
THR C:405 , ASP C:406 , PHE C:431
BINDING SITE FOR RESIDUE CL C 2401
49
FC4
SOFTWARE
ASN C:1028 , HOH C:1109 , HOH D:415 , HOH D:416 , GLU D:424 , HOH D:1069 , HOH D:1070
BINDING SITE FOR RESIDUE CA C 1067
50
FC5
SOFTWARE
HIS D:757 , HIS D:762 , HIS D:943 , ASN D:947 , ILE D:1066 , HOH D:1078
BINDING SITE FOR RESIDUE FE2 D 1500
51
FC6
SOFTWARE
HIS D:387 , GLY D:389 , ASP D:452 , ASP D:454 , HOH D:1085
BINDING SITE FOR RESIDUE CA D 1501
52
FC7
SOFTWARE
HIS D:762 , ASP D:797
BINDING SITE FOR RESIDUE ACD D 2001
53
FC8
SOFTWARE
HIS D:534 , SER D:548 , TYR D:551 , GLN D:552
BINDING SITE FOR RESIDUE ACY D 2201
54
FC9
SOFTWARE
ASP D:578 , ALA D:596 , TRP D:599
BINDING SITE FOR RESIDUE ACY D 2202
55
GC1
SOFTWARE
PHE D:605 , GLN D:608 , GLU D:748 , ASN D:959
BINDING SITE FOR RESIDUE ACY D 2203
56
GC2
SOFTWARE
LEU D:562 , SER D:566 , LYS D:987 , SER D:988 , ALA D:991
BINDING SITE FOR RESIDUE ACY D 2204
57
GC3
SOFTWARE
ALA C:392 , ASP C:411 , LYS C:412 , GLY C:413 , HOH C:1415 , ASP D:1032 , GLU D:1035 , HOH D:1203
BINDING SITE FOR RESIDUE GOL D 2303
58
GC4
SOFTWARE
GLY D:876 , GLU D:926 , LYS D:929 , HOH D:1136
BINDING SITE FOR RESIDUE GOL D 1067
59
GC5
SOFTWARE
ASN D:573 , ASP D:575 , SER D:576 , ASP D:579 , HOH D:1258
BINDING SITE FOR RESIDUE GOL D 2304
60
GC6
SOFTWARE
ALA D:490 , TRP D:1018 , GLU D:1019 , ASP D:1020
BINDING SITE FOR RESIDUE CL D 2401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 16)
Info
All PROSITE Patterns/Profiles
1: PLAT (A:374-493,B:374-493,C:374-493,D:37...)
2: LIPOXYGENASE_3 (A:491-1066,B:491-1066,C:491-1066,D...)
3: LIPOXYGENASE_1 (A:752-766,B:752-766,C:752-766,D:75...)
4: LIPOXYGENASE_2 (A:779-789,B:779-789,C:779-789,D:77...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
AOSL_PLEHO
374-493
4
A:374-493
B:374-493
C:374-493
D:374-493
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
AOSL_PLEHO
491-1066
4
A:491-1066
B:491-1066
C:491-1066
D:491-1066
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
AOSL_PLEHO
752-766
4
A:752-766
B:752-766
C:752-766
D:752-766
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
AOSL_PLEHO
779-789
4
A:779-789
B:779-789
C:779-789
D:779-789
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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[
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CATH Domains
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all CATH domains
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[
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Pfam Domains
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