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3FG3
Biol. Unit 1
Info
Asym.Unit (516 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (130 KB)
Biol.Unit 3 (134 KB)
Biol.Unit 4 (129 KB)
Biol.Unit 5 (503 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DELTA413-417:GS I805W LOX
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
04 Dec 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Lipoxygenase, Arichidonic Metabolism, Dioxygenase, Fatty Acid Biosynthesis, Heme, Iron, Lipid Synthesis, Lyase, Membrane, Metal- Binding, Multifunctional Enzyme, Oxidoreductase, Oxylipin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, N. C. Gilbert, S. G. Bartlett, W. Boeglin, A. R. Brash, M. E. Newcomer
The 1. 85 A Structure Of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity.
Biochemistry V. 48 7906 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
1n: ACETIC ACID (ACYn)
1o: ACETIC ACID (ACYo)
1p: ACETIC ACID (ACYp)
1q: ACETIC ACID (ACYq)
1r: ACETIC ACID (ACYr)
1s: ACETIC ACID (ACYs)
1t: ACETIC ACID (ACYt)
1u: ACETIC ACID (ACYu)
1v: ACETIC ACID (ACYv)
1w: ACETIC ACID (ACYw)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
5o: GLYCEROL (GOLo)
5p: GLYCEROL (GOLp)
5q: GLYCEROL (GOLq)
5r: GLYCEROL (GOLr)
5s: GLYCEROL (GOLs)
5t: GLYCEROL (GOLt)
5u: GLYCEROL (GOLu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
8
Ligand/Ion
ACETIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
FE2
1
Ligand/Ion
FE (II) ION
5
GOL
9
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:194 , HIS A:757 , HIS A:762 , HIS A:943 , ASN A:947 , ILE A:1066
BINDING SITE FOR RESIDUE FE2 A 1500
02
AC2
SOFTWARE
HIS A:387 , GLY A:389 , ASP A:452 , ASP A:454 , HOH A:1226
BINDING SITE FOR RESIDUE CA A 1501
03
AC3
SOFTWARE
HOH A:190 , GLU A:424 , HOH A:1083 , HOH A:1108 , HOH B:326 , ASN B:1028 , HOH B:1143
BINDING SITE FOR RESIDUE CA A 1502
04
AC4
SOFTWARE
PHE A:605 , GLN A:608 , PHE A:609 , GLU A:748 , ASN A:959
BINDING SITE FOR RESIDUE ACY A 2200
05
AC5
SOFTWARE
HIS A:534 , SER A:548 , TYR A:551 , GLN A:552
BINDING SITE FOR RESIDUE ACY A 2201
06
AC6
SOFTWARE
GLN A:753 , SER A:814 , TYR A:954 , ALA A:962 , ALA A:993 , VAL A:997
BINDING SITE FOR RESIDUE ACY A 2202
07
AC7
SOFTWARE
ASN A:636 , ALA A:637 , LEU A:639
BINDING SITE FOR RESIDUE ACY A 2203
08
AC8
SOFTWARE
PHE A:1003 , TYR A:1009 , GLU A:1058 , HOH A:1940
BINDING SITE FOR RESIDUE ACY A 2204
09
AC9
SOFTWARE
LEU A:624 , HOH D:196 , LYS D:890 , GLN D:896 , SER D:921 , PHE D:922
BINDING SITE FOR RESIDUE ACY A 2220
10
BC1
SOFTWARE
GLY A:707 , GLY A:857 , HOH A:2469
BINDING SITE FOR RESIDUE ACY A 2222
11
BC2
SOFTWARE
LEU A:562 , GLY A:565 , SER A:566 , ALA A:991 , HOH A:1573
BINDING SITE FOR RESIDUE ACY A 2218
12
BC3
SOFTWARE
ASN A:636 , LEU A:639 , ASP A:640 , ARG A:641 , GLY A:642 , LYS A:643 , ASN A:644
BINDING SITE FOR RESIDUE GOL A 2301
13
BC4
SOFTWARE
GLY A:876 , ILE A:879 , ALA A:880 , GLU A:926 , LYS A:929 , HOH A:1338 , HOH A:2447
BINDING SITE FOR RESIDUE GOL A 2302
14
BC5
SOFTWARE
ASP A:391 , ALA A:392 , THR A:393 , ILE A:394 , LEU A:410 , ASP A:411 , GLY A:413 , PHE A:418 , HOH A:1140 , HOH A:2102 , GOL B:2310
BINDING SITE FOR RESIDUE GOL A 2303
15
BC6
SOFTWARE
VAL A:661 , ASN A:755 , ARG A:760 , CYS A:829 , GLU A:832 , HOH A:1147 , HOH A:1549
BINDING SITE FOR RESIDUE GOL A 2304
16
BC7
SOFTWARE
GLU A:572 , ASN A:573 , ASP A:575 , SER A:576 , ASP A:579
BINDING SITE FOR RESIDUE GOL A 2305
17
BC8
SOFTWARE
ASP A:384 , ARG A:385 , PHE A:456 , ASN A:458 , SER A:1014 , ALA A:1015 , HOH A:1109 , HOH A:1931 , ASP B:384 , GLY B:421
BINDING SITE FOR RESIDUE GOL A 2306
18
BC9
SOFTWARE
HOH A:172 , ASP A:862 , ASP A:863 , ILE A:1037 , LYS A:1040 , ILE A:1041 , HOH A:1101
BINDING SITE FOR RESIDUE GOL A 2307
19
CC1
SOFTWARE
ASP A:578 , HIS A:600 , HOH A:1168 , HOH A:1522
BINDING SITE FOR RESIDUE GOL A 2308
20
CC2
SOFTWARE
ALA A:490 , TRP A:1018 , GLU A:1019 , ASP A:1020 , HOH A:1352
BINDING SITE FOR RESIDUE CL A 2401
21
CC3
SOFTWARE
THR A:405 , ASP A:406 , GLY A:430 , PHE A:431
BINDING SITE FOR RESIDUE CL A 2402
22
CC4
SOFTWARE
HOH A:65 , HOH A:206 , ASN A:1028 , HOH B:93 , HOH B:305 , GLU B:424 , HOH B:1160
BINDING SITE FOR RESIDUE CA A 1067
23
CC5
SOFTWARE
HOH A:202 , ASP A:1032 , GLU A:1035 , HOH A:1295 , HOH B:299 , ASP B:391 , ALA B:392 , ASP B:411 , GLY B:413
BINDING SITE FOR RESIDUE GOL A 2320
24
DC4
SOFTWARE
ASP A:411 , GLY A:413 , HOH A:2102 , GOL A:2303 , ASP B:1032 , GLU B:1035 , HOH B:1254 , HOH B:1315
BINDING SITE FOR RESIDUE GOL B 2310
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (A:374-493)
2: LIPOXYGENASE_3 (A:491-1066)
3: LIPOXYGENASE_1 (A:752-766)
4: LIPOXYGENASE_2 (A:779-789)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
AOSL_PLEHO
374-493
1
A:374-493
-
-
-
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
AOSL_PLEHO
491-1066
1
A:491-1066
-
-
-
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
AOSL_PLEHO
752-766
1
A:752-766
-
-
-
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
AOSL_PLEHO
779-789
1
A:779-789
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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