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3FG1
Biol. Unit 2
Info
Asym.Unit (516 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (131 KB)
Biol.Unit 3 (135 KB)
Biol.Unit 4 (130 KB)
Biol.Unit 5 (504 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DELTA413-417:GS LOX
Authors
:
D. B. Neau, M. E. Newcomer
Date
:
04 Dec 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Lipoxygenase, Arichidonic Metabolism, Dioxygenase, Fatty Acid Biosynthesis, Heme, Iron, Lipid Synthesis, Lyase, Membrane, Metal- Binding, Multifunctional Enzyme, Oxidoreductase, Oxylipin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Neau, N. C. Gilbert, S. G. Bartlett, W. Boeglin, A. R. Brash, M. E. Newcomer
The 1. 85 A Structure Of An 8R-Lipoxygenase Suggests A General Model For Lipoxygenase Product Specificity.
Biochemistry V. 48 7906 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 9)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
1n: ACETIC ACID (ACYn)
1o: ACETIC ACID (ACYo)
1p: ACETIC ACID (ACYp)
1q: ACETIC ACID (ACYq)
1r: ACETIC ACID (ACYr)
1s: ACETIC ACID (ACYs)
1t: ACETIC ACID (ACYt)
1u: ACETIC ACID (ACYu)
1v: ACETIC ACID (ACYv)
1w: ACETIC ACID (ACYw)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
4a: FE (II) ION (FE2a)
4b: FE (II) ION (FE2b)
4c: FE (II) ION (FE2c)
4d: FE (II) ION (FE2d)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
5o: GLYCEROL (GOLo)
5p: GLYCEROL (GOLp)
5q: GLYCEROL (GOLq)
5r: GLYCEROL (GOLr)
5s: GLYCEROL (GOLs)
5t: GLYCEROL (GOLt)
5u: GLYCEROL (GOLu)
5v: GLYCEROL (GOLv)
5w: GLYCEROL (GOLw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
FE2
1
Ligand/Ion
FE (II) ION
5
GOL
4
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC3 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC8 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC6 (SOFTWARE)
06: CC7 (SOFTWARE)
07: CC8 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC1 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC3 (SOFTWARE)
12: DC4 (SOFTWARE)
13: DC5 (SOFTWARE)
14: DC6 (SOFTWARE)
15: DC7 (SOFTWARE)
16: DC8 (SOFTWARE)
17: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
HOH A:191 , GLU A:424 , HOH A:1084 , HOH A:1109 , HOH B:327 , ASN B:1028 , HOH B:1145
BINDING SITE FOR RESIDUE CA A 1502
02
BC5
SOFTWARE
ALA A:392 , THR A:393 , ILE A:394 , LEU A:410 , ASP A:411 , PHE A:418 , HOH A:1139 , HOH B:2123 , GOL B:2306
BINDING SITE FOR RESIDUE GOL A 2303
03
BC8
SOFTWARE
GLY A:383 , ASP A:384 , ARG A:385 , PHE A:456 , ASN A:458 , ARG A:1008 , SER A:1014 , ALA A:1015 , HOH A:1110 , HOH A:1946 , ASP B:384 , GLY B:421
BINDING SITE FOR RESIDUE GOL A 2306
04
CC2
SOFTWARE
HOH A:203 , ASP A:1032 , GLU A:1035 , HOH A:1293 , HOH A:2549 , HOH B:300 , ALA B:392 , ASP B:411 , GLY B:413 , SER B:414 , HOH B:2550
BINDING SITE FOR RESIDUE GOL A 2309
05
CC6
SOFTWARE
HOH A:65 , HOH A:207 , ASN A:1028 , HOH B:93 , HOH B:306 , GLU B:424 , HOH B:1162
BINDING SITE FOR RESIDUE CA A 1067
06
CC7
SOFTWARE
HOH B:328 , HIS B:757 , HIS B:762 , HIS B:943 , ASN B:947 , ILE B:1066
BINDING SITE FOR RESIDUE FE2 B 1500
07
CC8
SOFTWARE
HIS B:387 , GLY B:389 , ASP B:452 , ASP B:454 , HOH B:1125
BINDING SITE FOR RESIDUE CA B 1501
08
CC9
SOFTWARE
PHE B:605 , GLN B:608 , PHE B:609 , GLU B:748 , ASN B:959
BINDING SITE FOR RESIDUE ACY B 2201
09
DC1
SOFTWARE
PHE B:1003 , TYR B:1009 , GLU B:1058 , ARG B:1059 , HOH B:1850 , HOH B:1951
BINDING SITE FOR RESIDUE ACY B 2202
10
DC2
SOFTWARE
LEU B:562 , SER B:566 , THR B:569 , SER B:988 , ALA B:991 , HOH B:2557
BINDING SITE FOR RESIDUE ACY B 2203
11
DC3
SOFTWARE
HIS B:534 , SER B:548 , TYR B:551 , GLN B:552
BINDING SITE FOR RESIDUE ACY B 2204
12
DC4
SOFTWARE
GLY B:876 , ILE B:879 , ALA B:880 , GLU B:926 , LYS B:929 , HOH B:1230 , HOH B:1877
BINDING SITE FOR RESIDUE GOL B 2305
13
DC5
SOFTWARE
ASP A:411 , GLY A:413 , GOL A:2303 , ASP B:1032 , GLU B:1035 , HOH B:1255 , HOH B:1316 , HOH B:2123
BINDING SITE FOR RESIDUE GOL B 2306
14
DC6
SOFTWARE
GLU B:572 , ASN B:573 , TRP B:574 , ASP B:575 , ASP B:579 , HOH B:1699 , HOH B:1853 , HOH B:2048 , ARG C:585
BINDING SITE FOR RESIDUE GOL B 2307
15
DC7
SOFTWARE
VAL B:661 , PHE B:751 , ASN B:755 , ARG B:760 , CYS B:829 , GLU B:832 , HOH B:1091 , HOH B:1096 , HOH B:2183
BINDING SITE FOR RESIDUE GOL B 2308
16
DC8
SOFTWARE
ALA B:490 , TRP B:1018 , GLU B:1019 , ASP B:1020 , HOH B:2393
BINDING SITE FOR RESIDUE CL B 2401
17
FC5
SOFTWARE
LYS B:890 , GLN B:896 , SER B:921 , PHE B:922 , GLU B:923 , LEU C:624 , SER C:626 , HOH C:1107 , HOH C:1149
BINDING SITE FOR RESIDUE GOL C 2307
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (B:374-493)
2: LIPOXYGENASE_3 (B:491-1066)
3: LIPOXYGENASE_1 (B:752-766)
4: LIPOXYGENASE_2 (B:779-789)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
AOSL_PLEHO
374-493
1
-
B:374-493
-
-
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
AOSL_PLEHO
491-1066
1
-
B:491-1066
-
-
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
AOSL_PLEHO
752-766
1
-
B:752-766
-
-
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
AOSL_PLEHO
779-789
1
-
B:779-789
-
-
[
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]
Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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Chain B
Asymmetric Unit 1
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