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3FEX
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (184 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CBC-IMPORTIN ALPHA COMPLEX.
Authors
:
S. M. G. Dias, A. L. B. Ambrosio, R. A. Cerione
Date
:
01 Dec 08 (Deposition) - 11 Aug 09 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cap Binding Complex, Importin Alpha, Nuclear Transport, Coiled Coil, Mrna Transport, Nucleus, Phosphoprotein, Rna- Binding, Acetylation, Cytoplasm, Host-Virus Interaction, Translation, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Dias, K. F. Wilson, K. S. Rojas, A. L. Ambrosio, R. A. Cerione
The Molecular Basis For The Regulation Of The Cap-Binding Complex By The Importins.
Nat. Struct. Mol. Biol. V. 16 930 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067625 (A157V, chain C, )
2: VAR_013137 (P165R, chain C, )
3: VAR_067626 (G365S, chain C, )
4: VAR_014453 (T430P, chain C, )
5: VAR_067627 (K453N, chain C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067625
A
157
V
IMA1_HUMAN
Polymorphism
17850032
C
A
157
V
2
UniProt
VAR_013137
P
165
R
IMA1_HUMAN
Polymorphism
11545989
C
P
165
R
3
UniProt
VAR_067626
G
365
S
IMA1_HUMAN
Polymorphism
1059558
C
G
365
S
4
UniProt
VAR_014453
T
430
P
IMA1_HUMAN
Polymorphism
1059538
C
T
430
P
5
UniProt
VAR_067627
K
453
N
IMA1_HUMAN
Polymorphism
17850031
C
K
453
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: RRM (B:40-118)
2: ARM_REPEAT (C:162-190|C:119-162|C:293-335|C:25...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
NCBP2_HUMAN
40-118
1
B:40-118
2
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
IMA1_HUMAN
162-190
119-162
293-335
251-293
335-377
5
C:162-190
C:119-162
C:293-335
C:251-293
C:335-377
[
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Exons
(33, 33)
Info
All Exons
Exon 1.3c (B:35-87 (gaps))
Exon 1.3g (B:87-118)
Exon 2.3 (C:69-71)
Exon 2.4 (C:72-101 (gaps))
Exon 2.5 (C:101-191)
Exon 2.6 (C:191-222 (gaps))
Exon 2.7 (C:223-310)
Exon 2.8 (C:311-388)
Exon 2.9 (C:389-449)
Exon 2.10 (C:450-496)
Exon 3.1a (A:2-12)
Exon 3.2 (A:12-40)
Exon 3.3 (A:44-75)
Exon 3.4 (A:75-127)
Exon 3.5 (A:128-163 (gaps))
Exon 3.6 (A:164-204)
Exon 3.7 (A:204-227)
Exon 3.8 (A:228-299)
Exon 3.9b (A:300-332)
Exon 3.10 (A:332-353)
Exon 3.11 (A:354-390)
Exon 3.12 (A:391-412)
Exon 3.13 (A:412-433)
Exon 3.14 (A:433-458)
Exon 3.15 (A:458-493)
Exon 3.16 (A:493-525)
Exon 3.17 (A:539-568)
Exon 3.18 (A:568-599)
Exon 3.19 (A:600-634)
Exon 3.20b (A:634-667)
Exon 3.21 (A:683-715)
Exon 3.22a (A:716-753)
Exon 3.23a (A:754-790)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3c
02: Boundary 1.3c/1.3g
03: Boundary 1.3g/1.3p
04: Boundary 2.2/2.3
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.11
13: Boundary -/3.1a
14: Boundary 3.1a/3.2
15: Boundary 3.2/3.3
16: Boundary 3.3/3.4
17: Boundary 3.4/3.5
18: Boundary 3.5/3.6
19: Boundary 3.6/3.7
20: Boundary 3.7/3.8
21: Boundary 3.8/3.9b
22: Boundary 3.9b/3.10
23: Boundary 3.10/3.11
24: Boundary 3.11/3.12
25: Boundary 3.12/3.13
26: Boundary 3.13/3.14
27: Boundary 3.14/3.15
28: Boundary 3.15/3.16
29: Boundary 3.16/3.17
30: Boundary 3.17/3.18
31: Boundary 3.18/3.19
32: Boundary 3.19/3.20b
33: Boundary 3.20b/3.21
34: Boundary 3.21/3.22a
35: Boundary 3.22a/3.23a
36: Boundary 3.23a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000321256
1a
ENSE00001056985
chr3:
196669468-196669297
172
NCBP2_HUMAN
1-26
26
0
-
-
1.3c
ENST00000321256
3c
ENSE00001786473
chr3:
196666303-196666122
182
NCBP2_HUMAN
27-87
61
1
B:35-87 (gaps)
53
1.3g
ENST00000321256
3g
ENSE00001618834
chr3:
196664519-196664381
139
NCBP2_HUMAN
87-133
47
1
B:87-118
32
1.3p
ENST00000321256
3p
ENSE00001929594
chr3:
196663953-196662278
1676
NCBP2_HUMAN
134-156
23
0
-
-
2.1
ENST00000330459
1
ENSE00001673356
chr17:
66031848-66031956
109
IMA1_HUMAN
-
0
0
-
-
2.2
ENST00000330459
2
ENSE00002150216
chr17:
66033226-66033323
98
IMA1_HUMAN
1-25
25
0
-
-
2.3
ENST00000330459
3
ENSE00001697155
chr17:
66033474-66033611
138
IMA1_HUMAN
26-71
46
1
C:69-71
3
2.4
ENST00000330459
4
ENSE00001771132
chr17:
66036794-66036882
89
IMA1_HUMAN
72-101
30
1
C:72-101 (gaps)
30
2.5
ENST00000330459
5
ENSE00001684697
chr17:
66038201-66038469
269
IMA1_HUMAN
101-191
91
1
C:101-191
91
2.6
ENST00000330459
6
ENSE00001643282
chr17:
66039021-66039115
95
IMA1_HUMAN
191-222
32
1
C:191-222 (gaps)
32
2.7
ENST00000330459
7
ENSE00001723038
chr17:
66039216-66039479
264
IMA1_HUMAN
223-310
88
1
C:223-310
88
2.8
ENST00000330459
8
ENSE00001716874
chr17:
66039954-66040187
234
IMA1_HUMAN
311-388
78
1
C:311-388
78
2.9
ENST00000330459
9
ENSE00001712528
chr17:
66040437-66040619
183
IMA1_HUMAN
389-449
61
1
C:389-449
61
2.10
ENST00000330459
10
ENSE00001781256
chr17:
66041888-66042037
150
IMA1_HUMAN
450-499
50
1
C:450-496
47
2.11
ENST00000330459
11
ENSE00001735149
chr17:
66042620-66042969
350
IMA1_HUMAN
500-529
30
0
-
-
3.1a
ENST00000375147
1a
ENSE00002154723
chr9:
100395908-100396197
290
NCBP1_HUMAN
1-12
12
1
A:2-12
11
3.2
ENST00000375147
2
ENSE00001610908
chr9:
100403076-100403164
89
NCBP1_HUMAN
12-41
30
1
A:12-40
29
3.3
ENST00000375147
3
ENSE00001626181
chr9:
100403844-100403944
101
NCBP1_HUMAN
42-75
34
1
A:44-75
32
3.4
ENST00000375147
4
ENSE00001686031
chr9:
100405486-100405642
157
NCBP1_HUMAN
75-127
53
1
A:75-127
53
3.5
ENST00000375147
5
ENSE00001730187
chr9:
100407399-100407506
108
NCBP1_HUMAN
128-163
36
1
A:128-163 (gaps)
36
3.6
ENST00000375147
6
ENSE00001803534
chr9:
100407893-100408014
122
NCBP1_HUMAN
164-204
41
1
A:164-204
41
3.7
ENST00000375147
7
ENSE00001693192
chr9:
100409774-100409843
70
NCBP1_HUMAN
204-227
24
1
A:204-227
24
3.8
ENST00000375147
8
ENSE00001662271
chr9:
100410290-100410505
216
NCBP1_HUMAN
228-299
72
1
A:228-299
72
3.9b
ENST00000375147
9b
ENSE00001610051
chr9:
100412785-100412882
98
NCBP1_HUMAN
300-332
33
1
A:300-332
33
3.10
ENST00000375147
10
ENSE00001738969
chr9:
100413592-100413655
64
NCBP1_HUMAN
332-353
22
1
A:332-353
22
3.11
ENST00000375147
11
ENSE00001767060
chr9:
100416080-100416190
111
NCBP1_HUMAN
354-390
37
1
A:354-390
37
3.12
ENST00000375147
12
ENSE00001626418
chr9:
100417162-100417226
65
NCBP1_HUMAN
391-412
22
1
A:391-412
22
3.13
ENST00000375147
13
ENSE00001803324
chr9:
100417984-100418046
63
NCBP1_HUMAN
412-433
22
1
A:412-433
22
3.14
ENST00000375147
14
ENSE00001648128
chr9:
100418293-100418367
75
NCBP1_HUMAN
433-458
26
1
A:433-458
26
3.15
ENST00000375147
15
ENSE00001763342
chr9:
100420922-100421025
104
NCBP1_HUMAN
458-493
36
1
A:458-493
36
3.16
ENST00000375147
16
ENSE00001592843
chr9:
100423228-100423350
123
NCBP1_HUMAN
493-534
42
1
A:493-525
33
3.17
ENST00000375147
17
ENSE00001800577
chr9:
100424324-100424426
103
NCBP1_HUMAN
534-568
35
1
A:539-568
30
3.18
ENST00000375147
18
ENSE00001802313
chr9:
100425236-100425329
94
NCBP1_HUMAN
568-599
32
1
A:568-599
32
3.19
ENST00000375147
19
ENSE00001714911
chr9:
100426622-100426725
104
NCBP1_HUMAN
600-634
35
1
A:600-634
35
3.20b
ENST00000375147
20b
ENSE00001728703
chr9:
100429045-100429159
115
NCBP1_HUMAN
634-672
39
1
A:634-667
34
3.21
ENST00000375147
21
ENSE00000926499
chr9:
100431128-100431256
129
NCBP1_HUMAN
673-715
43
1
A:683-715
33
3.22a
ENST00000375147
22a
ENSE00000926500
chr9:
100431875-100431988
114
NCBP1_HUMAN
716-753
38
1
A:716-753
38
3.23a
ENST00000375147
23a
ENSE00001465914
chr9:
100433368-100436030
2663
NCBP1_HUMAN
754-790
37
1
A:754-790
37
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(3, 5)
Info
all CATH domains
1a: CATH_3fexB00 (B:35-118)
2a: CATH_3fexC00 (C:69-496)
3a: CATH_3fexA03 (A:482-790)
3b: CATH_3fexA02 (A:290-481)
3c: CATH_3fexA01 (A:2-289)
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
3fexB00
B:35-118
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
2a
3fexC00
C:69-496
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.180, no name defined]
(12)
Human (Homo sapiens)
(10)
3a
3fexA03
A:482-790
3b
3fexA02
A:290-481
3c
3fexA01
A:2-289
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (190 KB)
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