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3FEA
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (4 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HDMX BOUND TO THE P53-PEPTIDOMIMETIC AC-PHE-MET-AIB-PMP-6-CL-TRP-GLU-AC3C-LEU-NH2 AT 1.33A
Authors
:
J. Kallen
Date
:
28 Nov 08 (Deposition) - 27 Jan 09 (Release) - 07 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.33
Chains
:
Asym. Unit : A,L,M
Biol. Unit 1: A,L (1x)
Biol. Unit 2: M (1x)
Keywords
:
Hdmx, Hdm4, Human Mdm4, Human Mdmx, Protein-Protein Interaction, P53, Metal-Binding, Nucleus, Polymorphism, Zinc, Zinc-Finger, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Kallen, A. Goepfert, A. Blechschmidt, A. Izaac, M. Geiser, G. Tavares, P. Ramage, P. Furet, K. Masuya, J. Lisztwan
Crystal Structures Of Human Mdmx (Hdmx) In Complex With P53 Peptide Analogues Reveal Surprising Conformational Changes
J. Biol. Chem. V. 284 8812 2009
(for further references see the
PDB file header
)
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: 1-AMINOCYCLOPROPANECARBOXYLIC ACID (1ACa)
1b: 1-AMINOCYCLOPROPANECARBOXYLIC ACID (1ACb)
2a: 6-CHLORO-L-TRYPTOPHAN (6CWa)
2b: 6-CHLORO-L-TRYPTOPHAN (6CWb)
3a: ACETYL GROUP (ACEa)
3b: ACETYL GROUP (ACEb)
4a: ALPHA-AMINOISOBUTYRIC ACID (AIBa)
4b: ALPHA-AMINOISOBUTYRIC ACID (AIBb)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
6a: AMINO GROUP (NH2a)
6b: AMINO GROUP (NH2b)
7a: 2-AMINO-3-(4-PHOSPHONOMETHYL-PHENY... (PM3a)
7b: 2-AMINO-3-(4-PHOSPHONOMETHYL-PHENY... (PM3b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1AC
2
Mod. Amino Acid
1-AMINOCYCLOPROPANECARBOXYLIC ACID
2
6CW
2
Mod. Amino Acid
6-CHLORO-L-TRYPTOPHAN
3
ACE
2
Mod. Amino Acid
ACETYL GROUP
4
AIB
2
Mod. Amino Acid
ALPHA-AMINOISOBUTYRIC ACID
5
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
NH2
2
Mod. Amino Acid
AMINO GROUP
7
PM3
2
Mod. Amino Acid
2-AMINO-3-(4-PHOSPHONOMETHYL-PHENYL)-PROPIONIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:39 , VAL A:62 , PRO A:95 , TYR A:99 , 6CW M:6
BINDING SITE FOR RESIDUE MPD A 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:26-26)
Exon 1.3 (A:27-51)
Exon 1.4 (A:52-96)
Exon 1.5a (A:96-108)
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.8a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367182
1a
ENSE00001443738
chr1:
204485511-204485637
127
MDM4_HUMAN
-
0
0
-
-
1.2a
ENST00000367182
2a
ENSE00002156140
chr1:
204494612-204494724
113
MDM4_HUMAN
1-26
26
1
A:26-26
1
1.3
ENST00000367182
3
ENSE00001039934
chr1:
204495488-204495562
75
MDM4_HUMAN
27-51
25
1
A:27-51
25
1.4
ENST00000367182
4
ENSE00001039926
chr1:
204499812-204499945
134
MDM4_HUMAN
52-96
45
1
A:52-96
45
1.5a
ENST00000367182
5a
ENSE00001039924
chr1:
204501319-204501374
56
MDM4_HUMAN
96-115
20
1
A:96-108
13
1.8a
ENST00000367182
8a
ENSE00001039927
chr1:
204506558-204506625
68
MDM4_HUMAN
115-137
23
0
-
-
1.9d
ENST00000367182
9d
ENSE00001039922
chr1:
204507337-204507436
100
MDM4_HUMAN
138-171
34
0
-
-
1.10b
ENST00000367182
10b
ENSE00001075004
chr1:
204511912-204512072
161
MDM4_HUMAN
171-224
54
0
-
-
1.11b
ENST00000367182
11b
ENSE00001074998
chr1:
204513663-204513812
150
MDM4_HUMAN
225-274
50
0
-
-
1.12b
ENST00000367182
12b
ENSE00001075005
chr1:
204515925-204516005
81
MDM4_HUMAN
275-301
27
0
-
-
1.13e
ENST00000367182
13e
ENSE00001123001
chr1:
204518241-204527248
9008
MDM4_HUMAN
302-490
189
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3feaa_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
SWIB/MDM2 domain
(62)
Superfamily
:
SWIB/MDM2 domain
(62)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3feaa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3feaA00 (A:26-108)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MDM2
(34)
Homologous Superfamily
:
MDM2
(34)
Human (Homo sapiens)
(22)
1a
3feaA00
A:26-108
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Pfam Domains
(0, 0)
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Chain M
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (26 KB)
Header - Asym.Unit
Biol.Unit 1 (19 KB)
Header - Biol.Unit 1
Biol.Unit 2 (4 KB)
Header - Biol.Unit 2
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