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3FE1
Biol. Unit 3
Info
Asym.Unit (195 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN 70KDA HEAT SHOCK PROTEIN 6 (HSP70B') ATPASE DOMAIN IN COMPLEX WITH ADP AND INORGANIC PHOSPHATE
Authors
:
M. Wisniewska, L. Lehtio, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, M. Moche, M. E. Nilsson, P. Nordlund, T. Nyman, C. Persson, J. Sagemark, M. I. Siponen, A. G. Thorsell, L. Tresaugues, S. Van Den Berg, J. Weigelt, M. Welin, M. Wikstrom, H. Schueler, Structural Genomics Consortium (Sgc)
Date
:
27 Nov 08 (Deposition) - 16 Dec 08 (Release) - 02 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Mixed Beta-Sheet, Atp-Binding, Nucleotide-Binding, Polymorphism, Stress Response, Chaperone, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wisniewska, T. Karlberg, L. Lehtio, I. Johansson, T. Kotenyova, M. Moche, H. Schueler
Crystal Structures Of The Atpase Domains Of Four Human Hsp70 Isoforms: Hspa1L/Hsp70-Hom, Hspa2/Hsp70-2, Hspa6/Hsp70B', And Hspa5/Bip/Grp78
Plos One V. 5 E8625 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
5
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
THR C:15 , THR C:16 , TYR C:17 , GLY C:203 , GLY C:204 , GLY C:232 , GLU C:270 , LYS C:273 , ARG C:274 , SER C:277 , GLY C:340 , GLY C:341 , SER C:342 , ARG C:344 , ASP C:368 , PO4 C:387 , MG C:388 , HOH C:394 , HOH C:406 , HOH C:416 , HOH C:432 , HOH C:436 , HOH C:437 , HOH C:440 , HOH C:462 , HOH C:488 , HOH C:493
BINDING SITE FOR RESIDUE ADP C 386
2
BC1
SOFTWARE
GLY C:14 , THR C:15 , LYS C:73 , GLU C:177 , THR C:206 , ADP C:386 , MG C:388 , HOH C:406 , HOH C:422 , HOH C:429 , HOH C:432 , HOH C:437
BINDING SITE FOR RESIDUE PO4 C 387
3
BC2
SOFTWARE
ADP C:386 , PO4 C:387 , HOH C:432 , HOH C:437 , HOH C:455 , HOH C:488
BINDING SITE FOR RESIDUE MG C 388
[
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SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_060718 (P65T, chain C, )
02: VAR_060719 (R95Q, chain C, )
03: VAR_049605 (A150T, chain C, )
04: VAR_049606 (N153S, chain C, )
05: VAR_049607 (D154N, chain C, )
06: VAR_060720 (A159V, chain C, )
07: VAR_049608 (N170K, chain C, )
08: VAR_049609 (R173P, chain C, )
09: VAR_049610 (P178A, chain C, )
10: VAR_049611 (E194K, chain C, )
11: VAR_024182 (L198F, chain C, )
12: VAR_049612 (R260H, chain C, )
13: VAR_060721 (T297K, chain C, )
14: VAR_059360 (V336F, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_060718
P
65
T
HSP76_HUMAN
Polymorphism
---
C
P
65
T
02
UniProt
VAR_060719
R
95
Q
HSP76_HUMAN
Polymorphism
---
C
R
95
Q
03
UniProt
VAR_049605
A
150
T
HSP76_HUMAN
Polymorphism
10919224
C
A
150
T
04
UniProt
VAR_049606
N
153
S
HSP76_HUMAN
Polymorphism
10919225
C
N
153
S
05
UniProt
VAR_049607
D
154
N
HSP76_HUMAN
Polymorphism
10919226
C
D
154
N
06
UniProt
VAR_060720
A
159
V
HSP76_HUMAN
Polymorphism
---
C
A
159
V
07
UniProt
VAR_049608
N
170
K
HSP76_HUMAN
Polymorphism
41297704
C
N
170
K
08
UniProt
VAR_049609
R
173
P
HSP76_HUMAN
Polymorphism
41297708
C
R
173
P
09
UniProt
VAR_049610
P
178
A
HSP76_HUMAN
Polymorphism
41297710
C
P
178
A
10
UniProt
VAR_049611
E
194
K
HSP76_HUMAN
Polymorphism
41297714
C
E
194
K
11
UniProt
VAR_024182
L
198
F
HSP76_HUMAN
Polymorphism
1079109
C
L
198
F
12
UniProt
VAR_049612
R
260
H
HSP76_HUMAN
Polymorphism
41299256
C
R
260
H
13
UniProt
VAR_060721
T
297
K
HSP76_HUMAN
Polymorphism
---
C
T
297
K
14
UniProt
VAR_059360
V
336
F
HSP76_HUMAN
Polymorphism
417707
C
V
336
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HSP70_1 (C:11-18)
2: HSP70_2 (C:199-212)
3: HSP70_3 (C:336-350)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
HSP76_HUMAN
11-18
1
-
-
C:11-18
2
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
HSP76_HUMAN
199-212
1
-
-
C:199-212
3
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
HSP76_HUMAN
336-350
1
-
-
C:336-350
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3fe1a1 (A:5-190)
1b: SCOP_d3fe1a2 (A:191-385)
1c: SCOP_d3fe1b1 (B:-1-190)
1d: SCOP_d3fe1b2 (B:191-385)
1e: SCOP_d3fe1c1 (C:6-190)
1f: SCOP_d3fe1c2 (C:191-384)
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)
(
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Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d3fe1a1
A:5-190
1b
d3fe1a2
A:191-385
1c
d3fe1b1
B:-1-190
1d
d3fe1b2
B:191-385
1e
d3fe1c1
C:6-190
1f
d3fe1c2
C:191-384
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_3fe1A02 (A:70-124)
1b: CATH_3fe1B02 (B:70-124)
1c: CATH_3fe1C02 (C:70-124)
2a: CATH_3fe1A01 (A:6-69,A:125-189,A:363-383)
2b: CATH_3fe1B01 (B:6-69,B:125-189,B:363-383)
2c: CATH_3fe1C01 (C:6-69,C:125-189,C:363-383)
2d: CATH_3fe1A03 (A:190-230,A:315-362)
2e: CATH_3fe1B03 (B:190-230,B:315-362)
2f: CATH_3fe1C03 (C:190-230,C:315-362)
3a: CATH_3fe1A04 (A:231-314)
3b: CATH_3fe1B04 (B:231-314)
3c: CATH_3fe1C04 (C:231-314)
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(
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Defensin A-like
(149)
Homologous Superfamily
:
[code=3.30.30.30, no name defined]
(60)
Human (Homo sapiens)
(15)
1a
3fe1A02
A:70-124
1b
3fe1B02
B:70-124
1c
3fe1C02
C:70-124
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Human (Homo sapiens)
(36)
2a
3fe1A01
A:6-69,A:125-189,A:363-383
2b
3fe1B01
B:6-69,B:125-189,B:363-383
2c
3fe1C01
C:6-69,C:125-189,C:363-383
2d
3fe1A03
A:190-230,A:315-362
2e
3fe1B03
B:190-230,B:315-362
2f
3fe1C03
C:190-230,C:315-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Human (Homo sapiens)
(29)
3a
3fe1A04
A:231-314
3b
3fe1B04
B:231-314
3c
3fe1C04
C:231-314
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Asymmetric Unit 1
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Asym.Unit (195 KB)
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