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3FDZ
Biol. Unit 1
Info
Asym.Unit (85 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (41 KB)
Biol.Unit 3 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOGLYCEROMUTASE FROM BURKHOLDERIA PSEUDOMALLEI 1710B WITH BOUND 2,3-DIPHOSPHOGLYCERIC ACID AND 3-PHOSPHOGLYCERIC ACID
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
26 Nov 08 (Deposition) - 13 Jan 09 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: A (1x)
Keywords
:
Isomerase, Ssgcid, Phosphoglyceromutase, Burkholderia Pseudomallei, Glycolysis, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Davies, B. L. Staker, J. A. Abendroth, T. E. Edwards, R. Hartley, J. Leonard, H. Kim, A. L. Rychel, S. N. Hewitt, P. J. Myler, L. J. Stewart
An Ensemble Of Structures Of Burkholderia Pseudomallei 2, 3-Bisphosphoglycerate-Dependent Phosphoglycerate Mutase.
Acta Crystallogr. , Sect. F V. 67 1044 2011
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: 3-PHOSPHOGLYCERIC ACID (3PGa)
2a: (2R)-2,3-DIPHOSPHOGLYCERIC ACID (DG2a)
3a: N1-PHOSPHONOHISTIDINE (NEPa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3PG
1
Ligand/Ion
3-PHOSPHOGLYCERIC ACID
2
DG2
1
Ligand/Ion
(2R)-2,3-DIPHOSPHOGLYCERIC ACID
3
NEP
1
Mod. Amino Acid
N1-PHOSPHONOHISTIDINE
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:8 , HIS A:9 , ASN A:15 , THR A:21 , GLY A:22 , ARG A:60 , GLU A:87 , TYR A:90 , LYS A:98 , ARG A:114 , ARG A:115 , HIS A:182 , GLY A:183 , ASN A:184 , HOH A:349 , HOH A:350 , HOH A:355
BINDING SITE FOR RESIDUE DG2 A1001
2
AC2
SOFTWARE
ASP A:194 , LEU A:204 , TYR A:214 , HIS A:225 , TYR A:227 , HOH A:259
BINDING SITE FOR RESIDUE PEG A1002
3
AC3
SOFTWARE
NEP B:9 , ARG B:19 , PHE B:20 , THR B:21 , GLY B:22 , GLU B:87 , TYR B:90 , LYS B:98 , ARG B:114 , ARG B:115 , ASN B:184 , HOH B:330
BINDING SITE FOR RESIDUE 3PG B1001
4
AC4
SOFTWARE
ILE B:190 , LEU B:204 , TYR B:214 , HIS B:225 , TYR B:227 , HOH B:366
BINDING SITE FOR RESIDUE PEG B1002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
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1: PG_MUTASE (A:6-15,B:6-15)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PG_MUTASE
PS00175
Phosphoglycerate mutase family phosphohistidine signature.
GPMA_BURP1
6-15
2
A:6-15
B:6-15
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3fdza_ (A:)
1b: SCOP_d3fdzb_ (B:)
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Protein Domains
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Cofactor-dependent phosphoglycerate mutase
(57)
Protein domain
:
automated matches
(41)
Burkholderia pseudomallei [TaxId: 320372]
(3)
1a
d3fdza_
A:
1b
d3fdzb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3fdzA00 (A:1-230)
1b: CATH_3fdzB00 (B:1-229)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Burkholderia pseudomallei 1710b. Organism_taxid: 320372. Strain: 1719b.
(2)
1a
3fdzA00
A:1-230
1b
3fdzB00
B:1-229
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Pfam Domains
(0, 0)
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Asym.Unit (85 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
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