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Asym.Unit (50 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A C2 DOMAIN FROM HUMAN SYNAPTOTAGMIN-LIKE PROTEIN 4
Authors
:
J. B. Bonanno, M. Rutter, K. T. Bain, S. Miller, R. Romero, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
26 Nov 08 (Deposition) - 23 Dec 08 (Release) - 23 Dec 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structural Genomics, Phospholipid Binding, Alternative Splicing, Cell Membrane, Cytoplasmic Vesicle, Membrane, Metal-Binding, Phosphoprotein, Polymorphism, Zinc, Zinc- Finger, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Bonanno, M. Rutter, K. T. Bain, S. Miller, R. Romero, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A C2 Domain From Human Synaptotagmin-Like Protein 4
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016076 (V420V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016076
I
420
V
SYTL4_HUMAN
Polymorphism
2022039
A/B
V
420
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C2 (A:372-462,B:372-462|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C2
PS50004
C2 domain profile.
SYTL4_HUMAN
372-462
527-617
2
A:372-462
B:372-462
-
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Exons
(3, 6)
Info
All Exons
Exon 1.13d (A:354-395 | B:354-395)
Exon 1.13e (A:395-429 | B:395-429)
Exon 1.13f (A:430-483 | B:430-483)
View:
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All Exon Boundaries
1: Boundary 1.13a/1.13d
2: Boundary 1.13d/1.13e
3: Boundary 1.13e/1.13f
4: Boundary 1.13f/1.14
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000372989
2b
ENSE00001459253
X:99986498-99986406
93
SYTL4_HUMAN
-
0
0
-
-
1.3a
ENST00000372989
3a
ENSE00001459251
X:99959882-99959807
76
SYTL4_HUMAN
-
0
0
-
-
1.4
ENST00000372989
4
ENSE00001796780
X:99958181-99958089
93
SYTL4_HUMAN
-
0
0
-
-
1.5b
ENST00000372989
5b
ENSE00001382017
X:99957103-99956924
180
SYTL4_HUMAN
1-37
37
0
-
-
1.6
ENST00000372989
6
ENSE00001154545
X:99956669-99956454
216
SYTL4_HUMAN
37-109
73
0
-
-
1.7
ENST00000372989
7
ENSE00001154536
X:99956325-99956216
110
SYTL4_HUMAN
109-146
38
0
-
-
1.8
ENST00000372989
8
ENSE00001154529
X:99955995-99955893
103
SYTL4_HUMAN
146-180
35
0
-
-
1.9
ENST00000372989
9
ENSE00001304452
X:99946206-99946105
102
SYTL4_HUMAN
180-214
35
0
-
-
1.10
ENST00000372989
10
ENSE00000673591
X:99945635-99945560
76
SYTL4_HUMAN
214-239
26
0
-
-
1.11
ENST00000372989
11
ENSE00000673572
X:99945162-99945072
91
SYTL4_HUMAN
240-270
31
0
-
-
1.12
ENST00000372989
12
ENSE00000673564
X:99944956-99944853
104
SYTL4_HUMAN
270-304
35
0
-
-
1.13a
ENST00000372989
13a
ENSE00000673560
X:99943440-99943348
93
SYTL4_HUMAN
305-335
31
0
-
-
1.13d
ENST00000372989
13d
ENSE00000673548
X:99942242-99942064
179
SYTL4_HUMAN
336-395
60
2
A:354-395
B:354-395
42
42
1.13e
ENST00000372989
13e
ENSE00000673528
X:99941778-99941676
103
SYTL4_HUMAN
395-429
35
2
A:395-429
B:395-429
35
35
1.13f
ENST00000372989
13f
ENSE00001218079
X:99941148-99940987
162
SYTL4_HUMAN
430-483
54
2
A:430-483
B:430-483
54
54
1.14
ENST00000372989
14
ENSE00001217979
X:99936332-99936224
109
SYTL4_HUMAN
484-520
37
0
-
-
1.15
ENST00000372989
15
ENSE00001217969
X:99934409-99934310
100
SYTL4_HUMAN
520-553
34
0
-
-
1.16b
ENST00000372989
16b
ENSE00000673492
X:99933596-99933388
209
SYTL4_HUMAN
553-623
71
0
-
-
1.17c
ENST00000372989
17c
ENSE00001459238
X:99931173-99929488
1686
SYTL4_HUMAN
623-671
49
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3fdwa_ (A:)
1b: SCOP_d3fdwb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d3fdwa_
A:
1b
d3fdwb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3fdwA00 (A:354-483)
1b: CATH_3fdwB00 (B:354-483)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
1a
3fdwA00
A:354-483
1b
3fdwB00
B:354-483
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Pfam Domains
(0, 0)
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all PFAM domains
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