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3FDR
Asym. Unit
Info
Asym.Unit (21 KB)
Biol.Unit 1 (17 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TDRD2
Authors
:
M. F Amaya, M. A. Adams, Y. Guo, Y. Li, I. Kozieradzki, A. M. Edwards, C. H. Arrowsmith, J. Weigelt, C. Bountra, A. Bochkarev, J. Min, Structural Genomics Consortium (Sgc)
Date
:
26 Nov 08 (Deposition) - 06 Jan 09 (Release) - 15 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tdrd2, Tudor, Structural Genomics, Structural Genomics Consortium, Sgc, Alternative Splicing, Rna-Binding, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chen, J. Jin, D. A. James, M. A. Adams-Cioaba, J. G. Park, Y. Guo, E. Tenaglia, C. Xu, G. Gish, J. Min, T. Pawson
Mouse Piwi Interactome Identifies Binding Mechanism Of Tdrkh Tudor Domain To Arginine Methylated Miwi
Proc. Natl. Acad. Sci. Usa V. 106 20336 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TUDOR (A:27-86)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUDOR
PS50304
Tudor domain profile.
TDRKH_HUMAN
353-412
1
A:27-86
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Exons
(3, 3)
Info
All Exons
Exon 1.10 (A:5-22)
Exon 1.11 (A:23-80)
Exon 1.12 (A:80-93)
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All Exon Boundaries
1: Boundary 1.9a/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000368827
2b
ENSE00001941603
chr1:
151762998-151762856
143
TDRKH_HUMAN
-
0
0
-
-
1.4b
ENST00000368827
4b
ENSE00002159845
chr1:
151755525-151755375
151
TDRKH_HUMAN
1-42
42
0
-
-
1.6
ENST00000368827
6
ENSE00001296403
chr1:
151754063-151753957
107
TDRKH_HUMAN
42-77
36
0
-
-
1.7e
ENST00000368827
7e
ENSE00001311108
chr1:
151752616-151752427
190
TDRKH_HUMAN
78-141
64
0
-
-
1.8a
ENST00000368827
8a
ENSE00001325745
chr1:
151751718-151751579
140
TDRKH_HUMAN
141-187
47
0
-
-
1.9a
ENST00000368827
9a
ENSE00001300321
chr1:
151751482-151751161
322
TDRKH_HUMAN
188-295
108
0
-
-
1.10
ENST00000368827
10
ENSE00001294518
chr1:
151749075-151748915
161
TDRKH_HUMAN
295-348
54
1
A:5-22
18
1.11
ENST00000368827
11
ENSE00001311139
chr1:
151748744-151748572
173
TDRKH_HUMAN
349-406
58
1
A:23-80
58
1.12
ENST00000368827
12
ENSE00001317063
chr1:
151748360-151748296
65
TDRKH_HUMAN
406-428
23
1
A:80-93
14
1.13
ENST00000368827
13
ENSE00001316963
chr1:
151748019-151747868
152
TDRKH_HUMAN
428-478
51
0
-
-
1.14
ENST00000368827
14
ENSE00001307144
chr1:
151747642-151747541
102
TDRKH_HUMAN
479-512
34
0
-
-
1.15
ENST00000368827
15
ENSE00001291350
chr1:
151747282-151747186
97
TDRKH_HUMAN
513-545
33
0
-
-
1.16a
ENST00000368827
16a
ENSE00001325167
chr1:
151746980-151746889
92
TDRKH_HUMAN
545-561
17
0
-
-
1.17
ENST00000368827
17
ENSE00001419045
chr1:
151744462-151744040
423
TDRKH_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3fdra_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
Tudor domain
(24)
Protein domain
:
Tudor and KH domain-containing protein TDRKH
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3fdra_
A:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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