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Biol. Unit 1
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Asym.Unit (101 KB)
Biol.Unit 1 (186 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LYSOSOMAL 66.3 KDA PROTEIN FROM MOUSE SOLVED BY S-SAD
Authors
:
K. Lakomek, A. Dickmanns, U. Mueller, R. Ficner
Date
:
20 Nov 08 (Deposition) - 03 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Alpha Beta, Glycosylated, Disulphide Bonds, Oxidized Cysteine, Glycoprotein, Hydrolase, Lipid Degradation, Lysosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Lakomek, A. Dickmanns, U. Mueller, K. Kollmann, F. Deuschl, A. Berndt, T. Lubke, R. Ficner
De Novo Sulfur Sad Phasing Of The Lysosomal 66. 3 Kda Protei From Mouse
Acta Crystallogr. , Sect. D V. 65 220 2009
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Hetero Components
(6, 26)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3a: SODIUM ION (NAa)
5a: CYSTEINESULFONIC ACID (OCSa)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
7a: TRIETHYLENE GLYCOL (PGEa)
8a: XENON (XEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
OCS
2
Mod. Amino Acid
CYSTEINESULFONIC ACID
6
PG4
4
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
8
XE
-1
Ligand/Ion
XENON
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:12 , ASN A:115 , PHE A:207 , HOH A:641 , HOH A:729
BINDING SITE FOR RESIDUE NAG A 11
02
AC2
SOFTWARE
NAG A:11 , LEU A:71 , GLY A:76 , PHE A:207 , THR A:209
BINDING SITE FOR RESIDUE NAG A 12
03
AC3
SOFTWARE
LYS A:159 , ASN A:236 , PG4 A:606
BINDING SITE FOR RESIDUE NAG A 21
04
AC4
SOFTWARE
ASN A:441 , GLN A:446 , HOH A:862
BINDING SITE FOR RESIDUE NAG A 31
05
AC5
SOFTWARE
ASN A:520
BINDING SITE FOR RESIDUE NAG A 41
06
AC6
SOFTWARE
NAG A:21 , LYS A:159 , PHE A:163 , ALA A:234 , TRP A:339 , VAL A:342 , PRO A:344 , HOH A:800
BINDING SITE FOR RESIDUE PG4 A 606
07
AC7
SOFTWARE
ASP A:363 , GLY A:364 , ALA A:365 , ASP A:369 , LYS A:372 , THR A:404 , VAL A:415 , ASP A:417 , HOH A:879
BINDING SITE FOR RESIDUE PG4 A 23
08
AC8
SOFTWARE
ASN A:167 , CYS A:347 , LEU A:349
BINDING SITE FOR RESIDUE XE A 607
09
AC9
SOFTWARE
ASP A:369 , VAL A:370 , ARG A:373 , HOH A:618
BINDING SITE FOR RESIDUE GOL A 1
10
BC1
SOFTWARE
GLY A:148 , GLU A:151 , VAL A:154
BINDING SITE FOR RESIDUE ACT A 608
11
BC2
SOFTWARE
HIS A:138 , LEU A:222 , SER A:225 , ASN A:270 , ASN A:274 , TYR A:307 , THR A:310 , HOH A:830
BINDING SITE FOR RESIDUE GOL A 2
12
BC3
SOFTWARE
ARG A:373 , ASP A:470 , ALA A:479 , ARG A:482 , LEU A:483
BINDING SITE FOR RESIDUE GOL A 3
13
BC4
SOFTWARE
GLN A:193 , TYR A:282 , LEU A:284 , GLY A:299 , LEU A:302 , TYR A:318 , VAL A:355 , ASN A:358 , ARG A:359 , HOH A:687
BINDING SITE FOR RESIDUE PGE A 22
14
BC5
SOFTWARE
OCS A:249 , ASP A:315 , GLU A:328 , THR A:330 , TYR A:379
BINDING SITE FOR RESIDUE NA A 609
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (186 KB)
Header - Biol.Unit 1
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