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Asym. Unit
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Asym.Unit (75 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN BRAIN ALPHA SPECTRIN REPEATS 15 AND 16. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR5563A.
Authors
:
S. M. Vorobiev, M. Su, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, H. Janjua, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date
:
18 Nov 08 (Deposition) - 25 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Spectrin Alpha Chain, Brain Spectrin, Non-Erythroid Alpha Chain Alpha-Ii Spectrin, Fordrin Alpha Chain, Sptan1, Spta2_human, Nesg, Hr5563A, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Actin Capping, Actin-Binding, Alternative Splicing, Calcium, Calmodulin-Binding, Cytoplasm, Cytoskeleton, Phosphoprotein, Polymorphism, Sh3 Domain, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Vorobiev, M. Su, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, H. Janjua, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Human Brain Alpha Spectrin Repeats 15 And 16.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 10)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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End label:
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Exons
(6, 12)
Info
All Exons
Exon 1.31 (A:1334-1349 (gaps) | B:1334-1349 (...)
Exon 1.32 (A:1349-1382 | B:1349-1382)
Exon 1.33b (A:1383-1448 | B:1383-1448)
Exon 1.34 (A:1449-1497 (gaps) | B:1449-1497 (...)
Exon 1.35 (A:1498-1532 | B:1498-1532)
Exon 1.36a (A:1532-1540 | B:1532-1544)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.30/1.31
2: Boundary 1.31/1.32
3: Boundary 1.32/1.33b
4: Boundary 1.33b/1.34
5: Boundary 1.34/1.35
6: Boundary 1.35/1.36a
7: Boundary 1.36a/1.39
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000372731
1a
ENSE00001362268
chr9:
131314869-131314975
107
SPTN1_HUMAN
-
0
0
-
-
1.3
ENST00000372731
3
ENSE00002152626
chr9:
131329017-131329256
240
SPTN1_HUMAN
1-79
79
0
-
-
1.4
ENST00000372731
4
ENSE00001783994
chr9:
131331051-131331176
126
SPTN1_HUMAN
80-121
42
0
-
-
1.5
ENST00000372731
5
ENSE00001627456
chr9:
131336954-131337094
141
SPTN1_HUMAN
122-168
47
0
-
-
1.6
ENST00000372731
6
ENSE00001767008
chr9:
131337478-131337624
147
SPTN1_HUMAN
169-217
49
0
-
-
1.7
ENST00000372731
7
ENSE00001750205
chr9:
131339102-131339235
134
SPTN1_HUMAN
218-262
45
0
-
-
1.8
ENST00000372731
8
ENSE00001693277
chr9:
131339408-131339552
145
SPTN1_HUMAN
262-310
49
0
-
-
1.9
ENST00000372731
9
ENSE00001796301
chr9:
131339631-131339785
155
SPTN1_HUMAN
311-362
52
0
-
-
1.10
ENST00000372731
10
ENSE00001679538
chr9:
131340389-131340524
136
SPTN1_HUMAN
362-407
46
0
-
-
1.11
ENST00000372731
11
ENSE00001597357
chr9:
131341916-131342017
102
SPTN1_HUMAN
408-441
34
0
-
-
1.12a
ENST00000372731
12a
ENSE00001740794
chr9:
131343201-131343338
138
SPTN1_HUMAN
442-487
46
0
-
-
1.13a
ENST00000372731
13a
ENSE00001651430
chr9:
131344061-131344171
111
SPTN1_HUMAN
488-524
37
0
-
-
1.14
ENST00000372731
14
ENSE00001613637
chr9:
131344758-131344835
78
SPTN1_HUMAN
525-550
26
0
-
-
1.15
ENST00000372731
15
ENSE00001790966
chr9:
131344973-131345128
156
SPTN1_HUMAN
551-602
52
0
-
-
1.16
ENST00000372731
16
ENSE00001683382
chr9:
131345356-131345560
205
SPTN1_HUMAN
603-671
69
0
-
-
1.17
ENST00000372731
17
ENSE00001704186
chr9:
131346067-131346248
182
SPTN1_HUMAN
671-731
61
0
-
-
1.18
ENST00000372731
18
ENSE00001611067
chr9:
131346561-131346804
244
SPTN1_HUMAN
732-813
82
0
-
-
1.19
ENST00000372731
19
ENSE00001612670
chr9:
131347000-131347122
123
SPTN1_HUMAN
813-854
42
0
-
-
1.20
ENST00000372731
20
ENSE00001777576
chr9:
131348027-131348244
218
SPTN1_HUMAN
854-926
73
0
-
-
1.21
ENST00000372731
21
ENSE00001776409
chr9:
131349885-131349977
93
SPTN1_HUMAN
927-957
31
0
-
-
1.22
ENST00000372731
22
ENSE00001627979
chr9:
131351088-131351222
135
SPTN1_HUMAN
958-1002
45
0
-
-
1.23
ENST00000372731
23
ENSE00001768241
chr9:
131353756-131353904
149
SPTN1_HUMAN
1003-1052
50
0
-
-
1.24a
ENST00000372731
24a
ENSE00001628507
chr9:
131355262-131355321
60
SPTN1_HUMAN
1052-1072
21
0
-
-
1.24c
ENST00000372731
24c
ENSE00001697865
chr9:
131356454-131356652
199
SPTN1_HUMAN
1072-1138
67
0
-
-
1.25
ENST00000372731
25
ENSE00001643835
chr9:
131360679-131360783
105
SPTN1_HUMAN
1139-1173
35
0
-
-
1.26a
ENST00000372731
26a
ENSE00001742935
chr9:
131361242-131361265
24
SPTN1_HUMAN
1174-1181
8
0
-
-
1.27b
ENST00000372731
27b
ENSE00001636184
chr9:
131362359-131362394
36
SPTN1_HUMAN
1182-1193
12
0
-
-
1.28
ENST00000372731
28
ENSE00001614825
chr9:
131365822-131365869
48
SPTN1_HUMAN
1194-1209
16
0
-
-
1.29
ENST00000372731
29
ENSE00001614795
chr9:
131366605-131366696
92
SPTN1_HUMAN
1210-1240
31
0
-
-
1.30
ENST00000372731
30
ENSE00001724801
chr9:
131367313-131367457
145
SPTN1_HUMAN
1240-1288
49
0
-
-
1.31
ENST00000372731
31
ENSE00001693184
chr9:
131367575-131367756
182
SPTN1_HUMAN
1289-1349
61
2
A:1334-1349 (gaps)
B:1334-1349 (gaps)
49
49
1.32
ENST00000372731
32
ENSE00001599564
chr9:
131369883-131369982
100
SPTN1_HUMAN
1349-1382
34
2
A:1349-1382
B:1349-1382
34
34
1.33b
ENST00000372731
33b
ENSE00001749734
chr9:
131370131-131370328
198
SPTN1_HUMAN
1383-1448
66
2
A:1383-1448
B:1383-1448
66
66
1.34
ENST00000372731
34
ENSE00001720104
chr9:
131370409-131370555
147
SPTN1_HUMAN
1449-1497
49
2
A:1449-1497 (gaps)
B:1449-1497 (gaps)
49
49
1.35
ENST00000372731
35
ENSE00001654893
chr9:
131371153-131371256
104
SPTN1_HUMAN
1498-1532
35
2
A:1498-1532
B:1498-1532
35
35
1.36a
ENST00000372731
36a
ENSE00001729156
chr9:
131371401-131371563
163
SPTN1_HUMAN
1532-1586
55
2
A:1532-1540
B:1532-1544
9
13
1.39
ENST00000372731
39
ENSE00001644730
chr9:
131373993-131374124
132
SPTN1_HUMAN
1587-1630
44
0
-
-
1.40b
ENST00000372731
40b
ENSE00001771137
chr9:
131374388-131374525
138
SPTN1_HUMAN
1631-1676
46
0
-
-
1.41
ENST00000372731
41
ENSE00001695986
chr9:
131375660-131375764
105
SPTN1_HUMAN
1677-1711
35
0
-
-
1.42b
ENST00000372731
42b
ENSE00001697185
chr9:
131377911-131378119
209
SPTN1_HUMAN
1712-1781
70
0
-
-
1.43
ENST00000372731
43
ENSE00000806992
chr9:
131379919-131380039
121
SPTN1_HUMAN
1781-1821
41
0
-
-
1.44
ENST00000372731
44
ENSE00000730702
chr9:
131380266-131380387
122
SPTN1_HUMAN
1822-1862
41
0
-
-
1.45
ENST00000372731
45
ENSE00000730706
chr9:
131381150-131381282
133
SPTN1_HUMAN
1862-1906
45
0
-
-
1.46a
ENST00000372731
46a
ENSE00000806993
chr9:
131383437-131383535
99
SPTN1_HUMAN
1907-1939
33
0
-
-
1.47a
ENST00000372731
47a
ENSE00000730597
chr9:
131386607-131386766
160
SPTN1_HUMAN
1940-1993
54
0
-
-
1.47c
ENST00000372731
47c
ENSE00000730575
chr9:
131387382-131387458
77
SPTN1_HUMAN
1993-2018
26
0
-
-
1.48b
ENST00000372731
48b
ENSE00000730564
chr9:
131388048-131388257
210
SPTN1_HUMAN
2019-2088
70
0
-
-
1.49
ENST00000372731
49
ENSE00000730551
chr9:
131388670-131388966
297
SPTN1_HUMAN
2089-2187
99
0
-
-
1.50a
ENST00000372731
50a
ENSE00001215160
chr9:
131389665-131389777
113
SPTN1_HUMAN
2188-2225
38
0
-
-
1.51
ENST00000372731
51
ENSE00001752389
chr9:
131390204-131390221
18
SPTN1_HUMAN
2225-2231
7
0
-
-
1.53a
ENST00000372731
53a
ENSE00000730520
chr9:
131392600-131392654
55
SPTN1_HUMAN
2231-2249
19
0
-
-
1.54
ENST00000372731
54
ENSE00000730509
chr9:
131394406-131394602
197
SPTN1_HUMAN
2250-2315
66
0
-
-
1.55
ENST00000372731
55
ENSE00000730493
chr9:
131394710-131394763
54
SPTN1_HUMAN
2315-2333
19
0
-
-
1.56
ENST00000372731
56
ENSE00000730476
chr9:
131394851-131394997
147
SPTN1_HUMAN
2333-2382
50
0
-
-
1.57
ENST00000372731
57
ENSE00000806994
chr9:
131395087-131395234
148
SPTN1_HUMAN
2382-2431
50
0
-
-
1.58b
ENST00000372731
58b
ENSE00001412968
chr9:
131395488-131395941
454
SPTN1_HUMAN
2432-2472
41
0
-
-
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