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3F9M
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
HUMAN PANCREATIC GLUCOKINASE IN COMPLEX WITH GLUCOSE AND ACTIVATOR SHOWING A MOBILE FLAP
Authors
:
P. Petit, L. Gluais, A. Lagarde, L. Vuillard, J. A. Boutin, G. Ferry
Date
:
14 Nov 08 (Deposition) - 02 Dec 08 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glucokinase, Hexokinase Iv, Atp-Binding, Diabetes Mellitus, Disease Mutation, Glycolysis, Kinase, Nucleotide-Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Petit, M. Antoine, G. Ferry, J. A. Boutin, A. Lagarde, L. Gluais, R. Vincentelli, L. Vuillard
The Active Conformation Of Human Glucokinase Is Not Altered By Allosteric Activators
Acta Crystallogr. , Sect. D V. 67 929 2011
[
close entry info
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
2a: 2-AMINO-4-FLUORO-5-[(1-METHYL-1H-I... (MRKa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
2
MRK
1
Ligand/Ion
2-AMINO-4-FLUORO-5-[(1-METHYL-1H-IMIDAZOL-2-YL)SULFANYL]-N-(1,3-THIAZOL-2-YL)BENZAMIDE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:151 , PHE A:152 , PRO A:153 , THR A:168 , LYS A:169 , ASN A:204 , ASP A:205 , ILE A:225 , CYS A:230 , ASN A:231 , GLU A:256 , GLN A:287 , GLU A:290 , HOH A:512 , HOH A:537
BINDING SITE FOR RESIDUE GLC A 500
2
AC2
SOFTWARE
TYR A:61 , VAL A:62 , ARG A:63 , SER A:64 , THR A:65 , ILE A:211 , TYR A:214 , TYR A:215 , CYS A:220 , MET A:235 , LEU A:451 , VAL A:452 , VAL A:455
BINDING SITE FOR RESIDUE MRK A 501
[
close Site info
]
SAPs(SNPs)/Variants
(47, 47)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003692 (E4N, chain A, )
02: VAR_010583 (M11T, chain A, )
03: VAR_010584 (R36W, chain A, )
04: VAR_010585 (A53S, chain A, )
05: VAR_003693 (E70K, chain A, )
06: VAR_003694 (G80A, chain A, )
07: VAR_003695 (G80S, chain A, )
08: VAR_003696 (M107T, chain A, )
09: VAR_010586 (Y108H, chain A, )
10: VAR_012352 (I110T, chain A, )
11: VAR_012353 (A119D, chain A, )
12: VAR_003697 (S131P, chain A, )
13: VAR_010587 (H137R, chain A, )
14: VAR_010588 (F150S, chain A, )
15: VAR_012350 (L164P, chain A, )
16: VAR_010589 (T168P, chain A, )
17: VAR_003698 (G175R, chain A, )
18: VAR_003699 (V182M, chain A, )
19: VAR_003700 (A188T, chain A, )
20: VAR_003701 (V203A, chain A, )
21: VAR_010590 (T209M, chain A, )
22: VAR_012351 (M210K, chain A, )
23: VAR_010591 (M210T, chain A, )
24: VAR_010592 (C213R, chain A, )
25: VAR_003702 (E221K, chain A, )
26: VAR_003703 (V226M, chain A, )
27: VAR_003704 (G227C, chain A, )
28: VAR_003705 (T228M, chain A, )
29: VAR_003706 (E256K, chain A, )
30: VAR_003707 (W257R, chain A, )
31: VAR_010593 (A259T, chain A, )
32: VAR_010594 (G261E, chain A, )
33: VAR_003708 (G261R, chain A, )
34: VAR_003709 (E279Q, chain A, )
35: VAR_003710 (G299R, chain A, )
36: VAR_003712 (E300K, chain A, )
37: VAR_003711 (E300Q, chain A, )
38: VAR_003713 (L309P, chain A, )
39: VAR_010595 (S336L, chain A, )
40: VAR_066615 (T342P, chain A, )
41: VAR_010596 (V367M, chain A, )
42: VAR_010597 (C382Y, chain A, )
43: VAR_010598 (A384T, chain A, )
44: VAR_012354 (G385V, chain A, )
45: VAR_010599 (R392C, chain A, )
46: VAR_003714 (K414E, chain A, )
47: VAR_003715 (V455M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003692
D
4
N
HXK4_HUMAN
Polymorphism
---
A
E
4
N
02
UniProt
VAR_010583
A
11
T
HXK4_HUMAN
Polymorphism
116093166
A
M
11
T
03
UniProt
VAR_010584
R
36
W
HXK4_HUMAN
Disease (MODY2)
---
A
R
36
W
04
UniProt
VAR_010585
A
53
S
HXK4_HUMAN
Disease (MODY2)
---
A
A
53
S
05
UniProt
VAR_003693
E
70
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
70
K
06
UniProt
VAR_003694
G
80
A
HXK4_HUMAN
Disease (MODY2)
---
A
G
80
A
07
UniProt
VAR_003695
G
80
S
HXK4_HUMAN
Disease (MODY2)
---
A
G
80
S
08
UniProt
VAR_003696
M
107
T
HXK4_HUMAN
Polymorphism
---
A
M
107
T
09
UniProt
VAR_010586
Y
108
H
HXK4_HUMAN
Disease (MODY2)
---
A
Y
108
H
10
UniProt
VAR_012352
I
110
T
HXK4_HUMAN
Disease (MODY2)
---
A
I
110
T
11
UniProt
VAR_012353
A
119
D
HXK4_HUMAN
Disease (MODY2)
---
A
A
119
D
12
UniProt
VAR_003697
S
131
P
HXK4_HUMAN
Disease (MODY2)
---
A
S
131
P
13
UniProt
VAR_010587
H
137
R
HXK4_HUMAN
Disease (MODY2)
---
A
H
137
R
14
UniProt
VAR_010588
F
150
S
HXK4_HUMAN
Disease (MODY2)
---
A
F
150
S
15
UniProt
VAR_012350
L
164
P
HXK4_HUMAN
Disease (MODY2)
---
A
L
164
P
16
UniProt
VAR_010589
T
168
P
HXK4_HUMAN
Disease (MODY2)
---
A
T
168
P
17
UniProt
VAR_003698
G
175
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
175
R
18
UniProt
VAR_003699
V
182
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
182
M
19
UniProt
VAR_003700
A
188
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
188
T
20
UniProt
VAR_003701
V
203
A
HXK4_HUMAN
Disease (MODY2)
---
A
V
203
A
21
UniProt
VAR_010590
T
209
M
HXK4_HUMAN
Disease (MODY2)
---
A
T
209
M
22
UniProt
VAR_012351
M
210
K
HXK4_HUMAN
Disease (MODY2)
---
A
M
210
K
23
UniProt
VAR_010591
M
210
T
HXK4_HUMAN
Disease (MODY2)
---
A
M
210
T
24
UniProt
VAR_010592
C
213
R
HXK4_HUMAN
Disease (MODY2)
---
A
C
213
R
25
UniProt
VAR_003702
E
221
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
221
K
26
UniProt
VAR_003703
V
226
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
226
M
27
UniProt
VAR_003704
G
227
C
HXK4_HUMAN
Disease (MODY2)
---
A
G
227
C
28
UniProt
VAR_003705
T
228
M
HXK4_HUMAN
Disease (MODY2)
---
A
T
228
M
29
UniProt
VAR_003706
E
256
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
256
K
30
UniProt
VAR_003707
W
257
R
HXK4_HUMAN
Disease (MODY2)
---
A
W
257
R
31
UniProt
VAR_010593
A
259
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
259
T
32
UniProt
VAR_010594
G
261
E
HXK4_HUMAN
Disease (MODY2)
---
A
G
261
E
33
UniProt
VAR_003708
G
261
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
261
R
34
UniProt
VAR_003709
E
279
Q
HXK4_HUMAN
Disease (MODY2)
104894005
A
E
279
Q
35
UniProt
VAR_003710
G
299
R
HXK4_HUMAN
Disease (MODY2)
---
A
G
299
R
36
UniProt
VAR_003712
E
300
K
HXK4_HUMAN
Disease (MODY2)
---
A
E
300
K
37
UniProt
VAR_003711
E
300
Q
HXK4_HUMAN
Disease (MODY2)
---
A
E
300
Q
38
UniProt
VAR_003713
L
309
P
HXK4_HUMAN
Disease (MODY2)
---
A
L
309
P
39
UniProt
VAR_010595
S
336
L
HXK4_HUMAN
Disease (MODY2)
---
A
S
336
L
40
UniProt
VAR_066615
T
342
P
HXK4_HUMAN
Polymorphism
---
A
T
342
P
41
UniProt
VAR_010596
V
367
M
HXK4_HUMAN
Disease (MODY2)
---
A
V
367
M
42
UniProt
VAR_010597
C
382
Y
HXK4_HUMAN
Disease (MODY2)
---
A
C
382
Y
43
UniProt
VAR_010598
A
384
T
HXK4_HUMAN
Disease (MODY2)
---
A
A
384
T
44
UniProt
VAR_012354
G
385
V
HXK4_HUMAN
Disease (MODY2)
---
A
G
385
V
45
UniProt
VAR_010599
R
392
C
HXK4_HUMAN
Disease (MODY2)
---
A
R
392
C
46
UniProt
VAR_003714
K
414
E
HXK4_HUMAN
Disease (MODY2)
---
A
K
414
E
47
UniProt
VAR_003715
V
455
M
HXK4_HUMAN
Disease (HHF3)
---
A
V
455
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: HEXOKINASE_2 (A:12-454)
2: HEXOKINASE_1 (A:146-171)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXOKINASE_2
PS51748
Hexokinase domain profile.
HXK4_HUMAN
10-454
1
A:12-454
2
HEXOKINASE_1
PS00378
Hexokinase domain signature.
HXK4_HUMAN
146-171
1
A:146-171
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3f9ma1 (A:4-218)
1b: SCOP_d3f9ma2 (A:219-458)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d3f9ma1
A:4-218
1b
d3f9ma2
A:219-458
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3f9mA01 (A:4-59,A:216-442)
View:
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(
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Architectures
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Hexokinase; domain 1
(22)
Homologous Superfamily
:
[code=3.40.367.20, no name defined]
(22)
Human (Homo sapiens)
(16)
1a
3f9mA01
A:4-59,A:216-442
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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(currently selected atoms:
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Chain A
Asymmetric Unit 1
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