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3F9D
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE R132K:R111L:T54E MUTANT OF CELLULAR RETINOIC ACID-BINDING PROTEIN II COMPLEXED WITH C15-ALDEHYDE (A RETINAL ANALOG) AT 2.00 ANGSTROM RESOLUTION
Authors
:
X. Jia, J. H. Geiger
Date
:
13 Nov 08 (Deposition) - 27 Oct 09 (Release) - 27 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Crabpii, Retinal, Protonated Schiff Base, Psb, C15-Aldehyde, Retinoic Acid, Retinoid, Cytoplasm, Nucleus, Retinol- Binding, Transport, Vitamin A, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
X. Jia, K. S. Lee, C. Vasileiou, B. Borhan, J. H. Geiger
Two Distinctive Orientations Of Binding Determined By A Single Mutation In The Crabpii Mutant-C15-Aldehyde Complexes
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,3,3-TRIMETHYL-2-[(1E,3E)-3-METHY... (LSRa)
1b: 1,3,3-TRIMETHYL-2-[(1E,3E)-3-METHY... (LSRb)
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No.
Name
Count
Type
Full Name
1
LSR
2
Ligand/Ion
1,3,3-TRIMETHYL-2-[(1E,3E)-3-METHYLPENTA-1,3-DIEN-1-YL]CYCLOHEXENE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:121 , LYS A:132
BINDING SITE FOR RESIDUE LSR A 138
2
AC2
SOFTWARE
TRP B:109 , LEU B:121 , MET B:123 , LYS B:132
BINDING SITE FOR RESIDUE LSR B 138
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FABP (A:5-22,B:5-22)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
RABP2_HUMAN
6-23
2
A:5-22
B:5-22
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Exons
(4, 8)
Info
All Exons
Exon 1.2a (A:1-23 | B:1-23)
Exon 1.3b (A:23-82 | B:23-82)
Exon 1.4 (A:83-121 | B:83-121)
Exon 1.5b (A:122-137 | B:122-137)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000368222
2a
ENSE00001446616
chr1:
156675393-156675169
225
RABP2_HUMAN
1-24
24
2
A:1-23
B:1-23
23
23
1.3b
ENST00000368222
3b
ENSE00000959257
chr1:
156670844-156670666
179
RABP2_HUMAN
24-83
60
2
A:23-82
B:23-82
60
60
1.4
ENST00000368222
4
ENSE00000959258
chr1:
156670450-156670334
117
RABP2_HUMAN
84-122
39
2
A:83-121
B:83-121
39
39
1.5b
ENST00000368222
5b
ENSE00001446614
chr1:
156669868-156669398
471
RABP2_HUMAN
123-138
16
2
A:122-137
B:122-137
16
16
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3f9da_ (A:)
1b: SCOP_d3f9db_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
Cellular retinoic-acid-binding protein (CRABP)
(37)
Human (Homo sapiens), CRABP-II [TaxId: 9606]
(34)
1a
d3f9da_
A:
1b
d3f9db_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3f9dA00 (A:1-137)
1b: CATH_3f9dB00 (B:1-137)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
3f9dA00
A:1-137
1b
3f9dB00
B:1-137
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Pfam Domains
(0, 0)
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Asym.Unit (58 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (28 KB)
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