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3F90
Biol. Unit 4
Info
Asym.Unit (193 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (27 KB)
Biol.Unit 4 (27 KB)
Biol.Unit 5 (27 KB)
Biol.Unit 6 (27 KB)
Biol.Unit 7 (27 KB)
Biol.Unit 8 (27 KB)
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(1)
Title
:
DESULFOVIBRIO DESULFURICANS (ATCC 29577) SEMIQUINONE FLAVODOXIN
Authors
:
M. Guelker, Y. Shamoo
Date
:
13 Nov 08 (Deposition) - 17 Nov 09 (Release) - 17 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: D (1x)
Biol. Unit 4: E (1x)
Biol. Unit 5: F (1x)
Biol. Unit 6: H (1x)
Biol. Unit 7: I (1x)
Biol. Unit 8: G (1x)
Keywords
:
Flavodoxin-Like Fold, Fmn Binding, Semiquinone, Electron Transport, Flavoprotein, Fmn, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Guelker, Y. Shamoo
Structure Of Desulfovibrio Desulfuricans (Atcc 29577) Flavodoxin In The Semiquinone State
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
1d: FLAVIN MONONUCLEOTIDE (FMNd)
1e: FLAVIN MONONUCLEOTIDE (FMNe)
1f: FLAVIN MONONUCLEOTIDE (FMNf)
1g: FLAVIN MONONUCLEOTIDE (FMNg)
1h: FLAVIN MONONUCLEOTIDE (FMNh)
View:
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No.
Name
Count
Type
Full Name
1
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
SER B:139 , GLU B:142 , SER E:10 , SER E:11 , THR E:12 , GLY E:13 , ASN E:14 , THR E:15 , SER E:58 , ALA E:59 , TRP E:60 , GLY E:61 , SER E:93 , GLY E:94 , ASP E:95 , TYR E:98 , HIS E:100 , PHE E:101 , CYS E:102 , HOH E:163
BINDING SITE FOR RESIDUE FMN E 152
2
AC8
SOFTWARE
ALA E:138 , SER E:139 , GLU E:142 , SER G:10 , SER G:11 , THR G:12 , GLY G:13 , ASN G:14 , THR G:15 , SER G:58 , ALA G:59 , TRP G:60 , GLY G:61 , SER G:93 , GLY G:94 , ASP G:95 , TYR G:98 , HIS G:100 , PHE G:101 , CYS G:102 , HOH G:172
BINDING SITE FOR RESIDUE FMN G 156
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (E:4-145)
2: FLAVODOXIN (E:6-22)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
FLAV_DESDE
4-145
1
-
-
-
E:4-145
-
-
-
-
2
FLAVODOXIN
PS00201
Flavodoxin signature.
FLAV_DESDE
6-22
1
-
-
-
E:6-22
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3f90a_ (A:)
1b: SCOP_d3f90b_ (B:)
1c: SCOP_d3f90d_ (D:)
1d: SCOP_d3f90e_ (E:)
1e: SCOP_d3f90f_ (F:)
1f: SCOP_d3f90g_ (G:)
1g: SCOP_d3f90h_ (H:)
1h: SCOP_d3f90i_ (I:)
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)
Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Desulfovibrio desulfuricans [TaxId: 876]
(3)
1a
d3f90a_
A:
1b
d3f90b_
B:
1c
d3f90d_
D:
1d
d3f90e_
E:
1e
d3f90f_
F:
1f
d3f90g_
G:
1g
d3f90h_
H:
1h
d3f90i_
I:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3f90A00 (A:2-148)
1b: CATH_3f90B00 (B:2-148)
1c: CATH_3f90D00 (D:2-148)
1d: CATH_3f90E00 (E:2-148)
1e: CATH_3f90F00 (F:2-148)
1f: CATH_3f90G00 (G:2-148)
1g: CATH_3f90H00 (H:2-148)
1h: CATH_3f90I00 (I:2-148)
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(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.360, no name defined]
(150)
Desulfovibrio desulfuricans. Organism_taxid: 876. Strain: atcc 29577.
(3)
1a
3f90A00
A:2-148
1b
3f90B00
B:2-148
1c
3f90D00
D:2-148
1d
3f90E00
E:2-148
1e
3f90F00
F:2-148
1f
3f90G00
G:2-148
1g
3f90H00
H:2-148
1h
3f90I00
I:2-148
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (193 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
Biol.Unit 3 (27 KB)
Header - Biol.Unit 3
Biol.Unit 4 (27 KB)
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Biol.Unit 5 (27 KB)
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Biol.Unit 6 (27 KB)
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Biol.Unit 7 (27 KB)
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Biol.Unit 8 (27 KB)
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