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Getting 'Exon' information from database.
3F7R
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
FIRST PAIR OF FIBRONECTIN TYPE III DOMAINS AND PART OF THE CONNECTING SEGMENT OF THE INTEGRIN BETA4
Authors
:
J. M. De Pereda
Date
:
10 Nov 08 (Deposition) - 10 Mar 09 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Integrin, Hemidesmosome, Cell Adhesion, Carcinoma, Epidermolysis Bullosa, Alternative Splicing, Disease Mutation, Glycoprotein, Membrane, Phosphoprotein, Polymorphism, Receptor, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. De Pereda, M. P. Lillo, A. Sonnenberg
Structural Basis Of The Interaction Between Integrin Alpha6Beta4 And Plectin At The Hemidesmosomes
Embo J. V. 28 1180 2009
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:127 , GLY A:1139 , SER A:1140 , ARG A:1141 , LYS A:1142
BINDING SITE FOR RESIDUE CL A 201
2
AC2
SOFTWARE
ASN A:1185 , TYR A:1187
BINDING SITE FOR RESIDUE PEG A 301
3
AC3
SOFTWARE
HOH A:25 , HOH A:45 , HOH A:128 , ASP A:1175 , TYR A:1199 , GLU A:1204 , MET A:1270 , LYS A:1299 , GLU A:1309 , ILE A:1328
BINDING SITE FOR RESIDUE PEG A 302
4
AC4
SOFTWARE
HOH A:132 , LYS A:1177 , GLU A:1254 , LYS A:1299 , TRP A:1306
BINDING SITE FOR RESIDUE EDO A 303
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011300 (H1216Q, chain A, )
2: VAR_011301 (R1225H, chain A, )
3: VAR_004011 (R1281W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011300
H
1216
Q
ITB4_HUMAN
Polymorphism
---
A
H
1216
Q
2
UniProt
VAR_011301
R
1225
H
ITB4_HUMAN
Disease (EB-PA)
---
A
R
1225
H
3
UniProt
VAR_004011
R
1281
W
ITB4_HUMAN
Disease (EB-PA)
---
A
R
1281
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:1129-1218|A:1222-1321|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
ITB4_HUMAN
1129-1218
1222-1321
1530-1625
1643-1739
2
A:1129-1218
A:1222-1321
-
-
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.28 (A:1126-1158)
Exon 1.29 (A:1159-1219)
Exon 1.30 (A:1219-1265)
Exon 1.31 (A:1265-1326)
Exon 1.32 (A:1326-1339)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.27/1.28
2: Boundary 1.28/1.29
3: Boundary 1.29/1.30
4: Boundary 1.30/1.31
5: Boundary 1.31/1.32
6: Boundary 1.32/1.33
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000200181
1
ENSE00001241194
chr17:
73717516-73717692
177
ITB4_HUMAN
-
0
0
-
-
1.2a
ENST00000200181
2a
ENSE00001324771
chr17:
73720774-73720862
89
ITB4_HUMAN
1-27
27
0
-
-
1.3
ENST00000200181
3
ENSE00001124485
chr17:
73723275-73723357
83
ITB4_HUMAN
27-54
28
0
-
-
1.4
ENST00000200181
4
ENSE00000949747
chr17:
73723485-73723586
102
ITB4_HUMAN
55-88
34
0
-
-
1.5
ENST00000200181
5
ENSE00001124471
chr17:
73723732-73723936
205
ITB4_HUMAN
89-157
69
0
-
-
1.6
ENST00000200181
6
ENSE00001124465
chr17:
73724458-73724554
97
ITB4_HUMAN
157-189
33
0
-
-
1.7
ENST00000200181
7
ENSE00001124457
chr17:
73725346-73725517
172
ITB4_HUMAN
189-246
58
0
-
-
1.8
ENST00000200181
8
ENSE00001124449
chr17:
73726322-73726585
264
ITB4_HUMAN
247-334
88
0
-
-
1.9
ENST00000200181
9
ENSE00001124443
chr17:
73726956-73727045
90
ITB4_HUMAN
335-364
30
0
-
-
1.10
ENST00000200181
10
ENSE00001124439
chr17:
73727327-73727449
123
ITB4_HUMAN
365-405
41
0
-
-
1.11
ENST00000200181
11
ENSE00001124435
chr17:
73727893-73728054
162
ITB4_HUMAN
406-459
54
0
-
-
1.12
ENST00000200181
12
ENSE00001124428
chr17:
73728244-73728320
77
ITB4_HUMAN
460-485
26
0
-
-
1.13
ENST00000200181
13
ENSE00001124422
chr17:
73729571-73729773
203
ITB4_HUMAN
485-553
69
0
-
-
1.14
ENST00000200181
14
ENSE00001124416
chr17:
73732132-73732235
104
ITB4_HUMAN
553-587
35
0
-
-
1.15
ENST00000200181
15
ENSE00001124412
chr17:
73732369-73732467
99
ITB4_HUMAN
588-620
33
0
-
-
1.16
ENST00000200181
16
ENSE00001124406
chr17:
73732646-73732775
130
ITB4_HUMAN
621-664
44
0
-
-
1.17
ENST00000200181
17
ENSE00001124401
chr17:
73733403-73733525
123
ITB4_HUMAN
664-705
42
0
-
-
1.18
ENST00000200181
18
ENSE00001124394
chr17:
73733619-73733725
107
ITB4_HUMAN
705-740
36
0
-
-
1.19
ENST00000200181
19
ENSE00000949763
chr17:
73735753-73735786
34
ITB4_HUMAN
741-752
12
0
-
-
1.20
ENST00000200181
20
ENSE00000949766
chr17:
73735961-73736152
192
ITB4_HUMAN
752-816
65
0
-
-
1.21a
ENST00000200181
21a
ENSE00000949770
chr17:
73736439-73736542
104
ITB4_HUMAN
816-850
35
0
-
-
1.22
ENST00000200181
22
ENSE00001687345
chr17:
73736874-73736932
59
ITB4_HUMAN
851-870
20
0
-
-
1.23
ENST00000200181
23
ENSE00001619429
chr17:
73737063-73737086
24
ITB4_HUMAN
870-878
9
0
-
-
1.24
ENST00000200181
24
ENSE00001805264
chr17:
73738422-73738570
149
ITB4_HUMAN
878-928
51
0
-
-
1.25
ENST00000200181
25
ENSE00001680833
chr17:
73738663-73738842
180
ITB4_HUMAN
928-988
61
0
-
-
1.26
ENST00000200181
26
ENSE00001768237
chr17:
73739794-73739942
149
ITB4_HUMAN
988-1037
50
0
-
-
1.27
ENST00000200181
27
ENSE00001689069
chr17:
73744922-73745126
205
ITB4_HUMAN
1038-1106
69
0
-
-
1.28
ENST00000200181
28
ENSE00001774407
chr17:
73746192-73746349
158
ITB4_HUMAN
1106-1158
53
1
A:1126-1158
33
1.29
ENST00000200181
29
ENSE00001767853
chr17:
73746761-73746941
181
ITB4_HUMAN
1159-1219
61
1
A:1159-1219
61
1.30
ENST00000200181
30
ENSE00001697152
chr17:
73747055-73747192
138
ITB4_HUMAN
1219-1265
47
1
A:1219-1265
47
1.31
ENST00000200181
31
ENSE00001652055
chr17:
73748255-73748437
183
ITB4_HUMAN
1265-1326
62
1
A:1265-1326
62
1.32
ENST00000200181
32
ENSE00001699238
chr17:
73748527-73748658
132
ITB4_HUMAN
1326-1370
45
1
A:1326-1339
14
1.33
ENST00000200181
33
ENSE00001194868
chr17:
73749846-73750055
210
ITB4_HUMAN
1370-1440
71
0
-
-
1.34
ENST00000200181
34
ENSE00001639205
chr17:
73750657-73750896
240
ITB4_HUMAN
1440-1520
81
0
-
-
1.36
ENST00000200181
36
ENSE00001653111
chr17:
73751782-73751931
150
ITB4_HUMAN
1520-1570
51
0
-
-
1.37
ENST00000200181
37
ENSE00001797424
chr17:
73752510-73752698
189
ITB4_HUMAN
1570-1633
64
0
-
-
1.38b
ENST00000200181
38b
ENSE00001690108
chr17:
73752785-73752940
156
ITB4_HUMAN
1633-1685
53
0
-
-
1.39
ENST00000200181
39
ENSE00001630802
chr17:
73753024-73753188
165
ITB4_HUMAN
1685-1740
56
0
-
-
1.40
ENST00000200181
40
ENSE00001616309
chr17:
73753281-73753391
111
ITB4_HUMAN
1740-1777
38
0
-
-
1.41
ENST00000200181
41
ENSE00001631008
chr17:
73753497-73753898
402
ITB4_HUMAN
1777-1822
46
0
-
-
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (113 KB)
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