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3F7Q
Biol. Unit 1
Info
Asym.Unit (227 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
FIRST PAIR OF FIBRONECTIN TYPE III DOMAINS AND PART OF THE CONNECTING SEGMENT OF THE INTEGRIN BETA4
Authors
:
J. M. De Pereda
Date
:
10 Nov 08 (Deposition) - 10 Mar 09 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Integrin, Hemidesmosome, Cell Adhesion, Carcinoma, Epidermolysis Bullosa, Alternative Splicing, Disease Mutation, Glycoprotein, Membrane, Phosphoprotein, Polymorphism, Receptor, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. De Pereda, M. P. Lillo, A. Sonnenberg
Structural Basis Of The Interaction Between Integrin Alpha6Beta4 And Plectin At The Hemidesmosomes
Embo J. V. 28 1180 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: TETRAETHYLENE GLYCOL (PG4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:238 , GLY A:1139 , SER A:1140 , ARG A:1141 , LYS A:1142 , LYS B:1142
BINDING SITE FOR RESIDUE CL A 601
2
AC2
SOFTWARE
ASN A:1185 , TYR A:1187 , GLU B:1245
BINDING SITE FOR RESIDUE PEG A 701
3
AC3
SOFTWARE
HOH A:201 , GLU A:1254 , LYS A:1272 , GLU B:1286 , ILE B:1334
BINDING SITE FOR RESIDUE 1PE A 703
4
AC4
SOFTWARE
GLU A:1170 , HIS A:1172
BINDING SITE FOR RESIDUE EDO A 706
5
AC5
SOFTWARE
GLU A:1222 , GLU B:1170
BINDING SITE FOR RESIDUE EDO A 707
6
AC6
SOFTWARE
LYS A:1142 , GLY B:1139 , SER B:1140 , ARG B:1141 , LYS B:1142
BINDING SITE FOR RESIDUE CL B 602
7
AC8
SOFTWARE
GLU A:1286 , ILE A:1326 , HOH B:410 , LYS B:1272 , LEU B:1274
BINDING SITE FOR RESIDUE PG4 B 704
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011300 (H1216Q, chain A, )
2: VAR_011301 (R1225H, chain A, )
3: VAR_004011 (R1281W, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011300
H
1216
Q
ITB4_HUMAN
Polymorphism
---
A
H
1216
Q
2
UniProt
VAR_011301
R
1225
H
ITB4_HUMAN
Disease (EB-PA)
---
A
R
1225
H
3
UniProt
VAR_004011
R
1281
W
ITB4_HUMAN
Disease (EB-PA)
---
A
R
1281
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:1129-1218,A:1222-1321)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
ITB4_HUMAN
1129-1218
1222-1321
1530-1625
1643-1739
2
A:1129-1218
-
A:1222-1321
-
-
-
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (227 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (111 KB)
Header - Biol.Unit 2
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