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3F7J
Biol. Unit 2
Info
Asym.Unit (103 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
B.SUBTILIS YVGN
Authors
:
Y. F. Zhou, J. Lei, Y. H. Liang, X. -D. Su
Date
:
09 Nov 08 (Deposition) - 25 Nov 08 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aldo-Keto Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lei, Y. F. Zhou, L. F. Li, X. -D. Su
Structural And Biochemical Analyses Of Yvgn And Ytbe From Bacillus Subtilis
Protein Sci. V. 18 1792 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: NITRATE ION (NO3a)
2b: NITRATE ION (NO3b)
2c: NITRATE ION (NO3c)
2d: NITRATE ION (NO3d)
2e: NITRATE ION (NO3e)
2f: NITRATE ION (NO3f)
2g: NITRATE ION (NO3g)
2h: NITRATE ION (NO3h)
2i: NITRATE ION (NO3i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
NO3
4
Ligand/Ion
NITRATE ION
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Sites
(7, 7)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
TRP A:81 , ASN A:82 , LEU A:274 , PHE A:276 , HOH A:422 , HOH A:599 , HOH A:660 , TRP B:81 , LEU B:274 , K B:281
BINDING SITE FOR RESIDUE NO3 A 280
2
AC6
SOFTWARE
PHE B:25 , SER B:190 , PRO B:191 , LEU B:192 , MET B:193 , GLN B:194 , PRO B:231 , LYS B:232 , HOH B:508
BINDING SITE FOR RESIDUE NO3 B 277
3
AC7
SOFTWARE
LEU B:192 , GLY B:195 , LEU B:198 , VAL B:214 , ALA B:215 , ARG B:238 , HOH B:295 , HOH B:301 , HOH B:395 , HOH B:467
BINDING SITE FOR RESIDUE NO3 B 278
4
AC8
SOFTWARE
ASP B:117 , LYS B:118 , TYR B:119 , LYS B:120 , ASP B:121 , HOH B:658
BINDING SITE FOR RESIDUE NO3 B 279
5
AC9
SOFTWARE
LYS A:55 , HOH A:356 , ALA B:52 , LYS B:55 , ARG B:100 , HOH B:307 , HOH B:334 , HOH B:421
BINDING SITE FOR RESIDUE NO3 B 280
6
BC1
SOFTWARE
NO3 A:280 , TRP B:81 , ASN B:82
BINDING SITE FOR RESIDUE K B 281
7
BC2
SOFTWARE
HOH A:486 , HOH B:668
BINDING SITE FOR RESIDUE K B 282
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (B:44-61)
2: ALDOKETO_REDUCTASE_2 (B:126-143)
3: ALDOKETO_REDUCTASE_3 (B:230-245)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
GR_BACSU
44-61
1
-
B:44-61
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
GR_BACSU
126-143
1
-
B:126-143
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
GR_BACSU
230-245
1
-
B:230-245
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3f7ja_ (A:)
1b: SCOP_d3f7jb_ (B:)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Bacillus subtilis [TaxId: 1423]
(3)
1a
d3f7ja_
A:
1b
d3f7jb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3f7jA00 (A:1-276)
1b: CATH_3f7jB00 (B:1-276)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Bacillus subtilis. Organism_taxid: 1423.
(5)
1a
3f7jA00
A:1-276
1b
3f7jB00
B:1-276
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Chain B
Asymmetric Unit 1
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Asym.Unit (103 KB)
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