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3F7J
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
B.SUBTILIS YVGN
Authors
:
Y. F. Zhou, J. Lei, Y. H. Liang, X. -D. Su
Date
:
09 Nov 08 (Deposition) - 25 Nov 08 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aldo-Keto Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lei, Y. F. Zhou, L. F. Li, X. -D. Su
Structural And Biochemical Analyses Of Yvgn And Ytbe From Bacillus Subtilis
Protein Sci. V. 18 1792 2009
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: NITRATE ION (NO3a)
2b: NITRATE ION (NO3b)
2c: NITRATE ION (NO3c)
2d: NITRATE ION (NO3d)
2e: NITRATE ION (NO3e)
2f: NITRATE ION (NO3f)
2g: NITRATE ION (NO3g)
2h: NITRATE ION (NO3h)
2i: NITRATE ION (NO3i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
2
NO3
9
Ligand/Ion
NITRATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:25 , SER A:190 , PRO A:191 , LEU A:192 , MET A:193 , GLN A:194 , PRO A:231 , LYS A:232
BINDING SITE FOR RESIDUE NO3 A 277
02
AC2
SOFTWARE
LEU A:192 , GLY A:195 , LEU A:198 , ALA A:215 , ARG A:238 , HOH A:302 , HOH A:329 , HOH A:454
BINDING SITE FOR RESIDUE NO3 A 278
03
AC3
SOFTWARE
ASP A:117 , LYS A:118 , TYR A:119 , LYS A:120 , ASP A:121 , HOH A:570 , HOH A:666
BINDING SITE FOR RESIDUE NO3 A 279
04
AC4
SOFTWARE
TRP A:81 , ASN A:82 , LEU A:274 , PHE A:276 , HOH A:422 , HOH A:599 , HOH A:660 , TRP B:81 , LEU B:274 , K B:281
BINDING SITE FOR RESIDUE NO3 A 280
05
AC5
SOFTWARE
ASP A:177 , TYR A:178 , GLY A:181 , GLN A:182 , HOH A:577
BINDING SITE FOR RESIDUE NO3 A 281
06
AC6
SOFTWARE
PHE B:25 , SER B:190 , PRO B:191 , LEU B:192 , MET B:193 , GLN B:194 , PRO B:231 , LYS B:232 , HOH B:508
BINDING SITE FOR RESIDUE NO3 B 277
07
AC7
SOFTWARE
LEU B:192 , GLY B:195 , LEU B:198 , VAL B:214 , ALA B:215 , ARG B:238 , HOH B:295 , HOH B:301 , HOH B:395 , HOH B:467
BINDING SITE FOR RESIDUE NO3 B 278
08
AC8
SOFTWARE
ASP B:117 , LYS B:118 , TYR B:119 , LYS B:120 , ASP B:121 , HOH B:658
BINDING SITE FOR RESIDUE NO3 B 279
09
AC9
SOFTWARE
LYS A:55 , HOH A:356 , ALA B:52 , LYS B:55 , ARG B:100 , HOH B:307 , HOH B:334 , HOH B:421
BINDING SITE FOR RESIDUE NO3 B 280
10
BC1
SOFTWARE
NO3 A:280 , TRP B:81 , ASN B:82
BINDING SITE FOR RESIDUE K B 281
11
BC2
SOFTWARE
HOH A:486 , HOH B:668
BINDING SITE FOR RESIDUE K B 282
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:44-61,B:44-61)
2: ALDOKETO_REDUCTASE_2 (A:126-143,B:126-143)
3: ALDOKETO_REDUCTASE_3 (A:230-245,B:230-245)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
GR_BACSU
44-61
2
A:44-61
B:44-61
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
GR_BACSU
126-143
2
A:126-143
B:126-143
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
GR_BACSU
230-245
2
A:230-245
B:230-245
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3f7ja_ (A:)
1b: SCOP_d3f7jb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Bacillus subtilis [TaxId: 1423]
(3)
1a
d3f7ja_
A:
1b
d3f7jb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3f7jA00 (A:1-276)
1b: CATH_3f7jB00 (B:1-276)
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)
Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Bacillus subtilis. Organism_taxid: 1423.
(5)
1a
3f7jA00
A:1-276
1b
3f7jB00
B:1-276
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (103 KB)
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