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3F34
Biol. Unit 1
Info
Asym.Unit (42 KB)
Biol.Unit 1 (787 KB)
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(1)
Title
:
APOFERRITIN: COMPLEX WITH 2,6-DIETHYLPHENOL
Authors
:
L. S. Vedula, N. J. Economou, M. J. Rossi, R. G. Eckenhoff, P. J. Loll
Date
:
30 Oct 08 (Deposition) - 14 Jul 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
4-Helix Bundle, Anesthetic, Propofol Analogue, 2, 6- Diethylphenol, Acetylation, Iron, Iron Storage, Metal- Binding, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. S. Vedula, G. Brannigan, N. J. Economou, J. Xi, M. A. Hall, R. Liu, M. J. Rossi, W. P. Dailey, K. C. Grasty, M. L. Klein, R. G. Eckenhoff, P. J. Loll
A Unitary Anesthetic Binding Site At High Resolution.
J. Biol. Chem. V. 284 24176 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 120)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
3a: 2,6-DIETHYLPHENOL (DIEa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
ACT
24
Ligand/Ion
ACETATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
DIE
24
Ligand/Ion
2,6-DIETHYLPHENOL
4
SO4
72
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:80 , GLN A:82 , HOH A:309
BINDING SITE FOR RESIDUE CD A 1001
02
AC2
SOFTWARE
GLU A:130 , HOH A:186 , HOH A:187
BINDING SITE FOR RESIDUE CD A 1002
03
AC3
SOFTWARE
GLU A:56 , GLU A:57 , GLU A:60
BINDING SITE FOR RESIDUE CD A 1003
04
AC4
SOFTWARE
GLU A:53 , GLU A:56
BINDING SITE FOR RESIDUE CD A 1004
05
AC5
SOFTWARE
ASP A:127
BINDING SITE FOR RESIDUE CD A 1005
06
AC6
SOFTWARE
LEU A:24 , SER A:27 , TYR A:28 , ARG A:59 , LEU A:81
BINDING SITE FOR RESIDUE DIE A 2001
07
AC7
SOFTWARE
GLN A:6 , ASN A:7 , HOH A:182 , HOH A:243 , HOH A:254 , HOH A:262
BINDING SITE FOR RESIDUE SO4 A 3001
08
AC8
SOFTWARE
GLU A:45 , LYS A:143 , ASP A:146 , HOH A:219 , HOH A:268 , HOH A:283 , HOH A:303 , HOH A:357
BINDING SITE FOR RESIDUE SO4 A 3002
09
AC9
SOFTWARE
ARG A:25 , SER A:85
BINDING SITE FOR RESIDUE SO4 A 3003
10
BC1
SOFTWARE
ASP A:127 , SER A:131 , HIS A:132 , ASP A:135 , HOH A:229
BINDING SITE FOR RESIDUE ACT A 3004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-155)
2: FERRITIN_1 (A:57-75)
3: FERRITIN_2 (A:122-142)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
24
A:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
24
A:57-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
24
A:122-142
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3f34a_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Horse (Equus caballus), L chain [TaxId: 9796]
(46)
1a
d3f34a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3f34A00 (A:2-171)
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Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Domestic horse,equine (Equus caballus)
(8)
1a
3f34A00
A:2-171
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Pfam Domains
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All Atoms
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
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Asym.Unit (42 KB)
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