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Getting 'Biological Unit' information from database.
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3F1Q
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
HUMAN DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH A LEFLUNOMIDE DERIVATIVE INHIBITOR 1
Authors
:
T. Heikkila, M. Davies, G. A. Mcconkey, C. W. G. Fishwick, M. R. Parsons, A. P. Johnson
Date
:
28 Oct 08 (Deposition) - 09 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dihydroorotate Dehydrogenase, Leflunomide, Fad, Flavoprotein, Membrane, Mitochondrion, Mitochondrion Inner Membrane, Oxidoreductase, Pyrimidine Biosynthesis, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Davies, T. Heikkila, G. A. Mcconkey, C. W. G. Fishwick, M. R. Parsons A. P. Johnson
Structure-Based Design, Synthesis, And Characterization Of Inhibitors Of Human And Plasmodium Falciparum Dihydroorotat Dehydrogenases
J. Med. Chem. V. 52 2683 2009
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close entry info
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: (2Z)-N-BIPHENYL-4-YL-2-CYANO-3-HYD... (BCEa)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
4a: OROTIC ACID (OROa)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
BCE
1
Ligand/Ion
(2Z)-N-BIPHENYL-4-YL-2-CYANO-3-HYDROXYBUT-2-ENAMIDE
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
ORO
1
Ligand/Ion
OROTIC ACID
5
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ORO A:1 , ALA A:95 , ALA A:96 , GLY A:97 , LYS A:100 , GLY A:119 , SER A:120 , ASN A:145 , TYR A:147 , ASN A:181 , ASN A:212 , LYS A:255 , THR A:283 , ASN A:284 , THR A:285 , SER A:305 , GLY A:306 , LEU A:309 , VAL A:333 , GLY A:334 , GLY A:335 , LEU A:355 , TYR A:356 , THR A:357 , HOH A:420 , HOH A:625
BINDING SITE FOR RESIDUE FMN A 398
2
AC2
SOFTWARE
LYS A:100 , ASN A:145 , TYR A:147 , GLY A:148 , PHE A:149 , ASN A:212 , SER A:215 , ASN A:217 , ASN A:284 , THR A:285 , FMN A:398
BINDING SITE FOR RESIDUE ORO A 1
3
AC3
SOFTWARE
TYR A:38 , MET A:43 , LEU A:46 , PRO A:52 , HIS A:56 , ALA A:59 , LEU A:68 , PHE A:98 , ARG A:136 , TYR A:356 , THR A:360 , PRO A:364 , HOH A:453
BINDING SITE FOR RESIDUE BCE A 397
4
AC4
SOFTWARE
GLN A:168 , ALA A:169 , THR A:172 , LEU A:205 , ASP A:207 , HOH A:407
BINDING SITE FOR RESIDUE ACY A 399
5
AC5
SOFTWARE
LYS A:307 , PRO A:308 , ASP A:311 , THR A:314 , GLN A:315 , ARG A:318 , HOH A:597
BINDING SITE FOR RESIDUE ACY A 2
6
AC6
SOFTWARE
ARG A:245 , VAL A:247 , HIS A:248
BINDING SITE FOR RESIDUE SO4 A 3
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_062413 (R136C, chain A, )
2: VAR_062414 (G153R, chain A, )
3: VAR_062415 (R200C, chain A, )
4: VAR_062416 (G203A, chain A, )
5: VAR_062417 (G203D, chain A, )
6: VAR_062418 (R245W, chain A, )
7: VAR_062419 (T285I, chain A, )
8: VAR_062420 (R347W, chain A, )
9: VAR_062421 (D393G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_062413
R
135
C
PYRD_HUMAN
Disease (POADS)
---
A
R
136
C
2
UniProt
VAR_062414
G
152
R
PYRD_HUMAN
Disease (POADS)
---
A
G
153
R
3
UniProt
VAR_062415
R
199
C
PYRD_HUMAN
Disease (POADS)
---
A
R
200
C
4
UniProt
VAR_062416
G
202
A
PYRD_HUMAN
Disease (POADS)
---
A
G
203
A
5
UniProt
VAR_062417
G
202
D
PYRD_HUMAN
Disease (POADS)
---
A
G
203
D
6
UniProt
VAR_062418
R
244
W
PYRD_HUMAN
Disease (POADS)
---
A
R
245
W
7
UniProt
VAR_062419
T
284
I
PYRD_HUMAN
Disease (POADS)
---
A
T
285
I
8
UniProt
VAR_062420
R
346
W
PYRD_HUMAN
Disease (POADS)
---
A
R
347
W
9
UniProt
VAR_062421
D
392
G
PYRD_HUMAN
Disease (POADS)
---
A
D
393
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:114-133)
2: DHODEHASE_2 (A:330-350)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRD_HUMAN
113-132
1
A:114-133
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRD_HUMAN
329-349
1
A:330-350
[
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Exons
(8, 8)
Info
All Exons
Exon 1.2 (A:33-79 (gaps))
Exon 1.3 (A:80-146)
Exon 1.4 (A:146-174)
Exon 1.5 (A:174-236)
Exon 1.6 (A:237-274)
Exon 1.7 (A:275-326)
Exon 1.8 (A:326-379)
Exon 1.9 (A:379-396)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000219240
1
ENSE00001420633
chr16:
72042643-72042684
42
PYRD_HUMAN
1-7
7
0
-
-
1.2
ENST00000219240
2
ENSE00000799143
chr16:
72045949-72046161
213
PYRD_HUMAN
8-78
71
1
A:33-79 (gaps)
47
1.3
ENST00000219240
3
ENSE00000692663
chr16:
72048372-72048571
200
PYRD_HUMAN
79-145
67
1
A:80-146
67
1.4
ENST00000219240
4
ENSE00000692662
chr16:
72050923-72051005
83
PYRD_HUMAN
145-173
29
1
A:146-174
29
1.5
ENST00000219240
5
ENSE00000692661
chr16:
72055023-72055210
188
PYRD_HUMAN
173-235
63
1
A:174-236
63
1.6
ENST00000219240
6
ENSE00000692660
chr16:
72056261-72056374
114
PYRD_HUMAN
236-273
38
1
A:237-274
38
1.7
ENST00000219240
7
ENSE00001718063
chr16:
72057064-72057217
154
PYRD_HUMAN
274-325
52
1
A:275-326
52
1.8
ENST00000219240
8
ENSE00001662402
chr16:
72057373-72057532
160
PYRD_HUMAN
325-378
54
1
A:326-379
54
1.9
ENST00000219240
9
ENSE00001737850
chr16:
72058044-72058954
911
PYRD_HUMAN
378-395
18
1
A:379-396
18
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3f1qa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Human (Homo sapiens) [TaxId: 9606]
(24)
1a
d3f1qa_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3f1qA00 (A:33-396)
View:
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(
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
3f1qA00
A:33-396
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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