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3EZQ
Asym. Unit
Info
Asym.Unit (290 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAS/FADD DEATH DOMAIN COMPLEX
Authors
:
R. Schwarzenbacher, H. Robinson, B. Stec, S. J. Riedl
Date
:
23 Oct 08 (Deposition) - 23 Dec 08 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Apoptosis, Disc, Fas, Fadd, Membrane, Receptor, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. L. Scott, B. Stec, C. Pop, M. K. Dobaczewska, J. J. Lee, E. Monosov, H. Robinson, G. S. Salvesen, R. Schwarzenbacher, S. J. Riedl
The Fas-Fadd Death Domain Complex Structure Unravels Signalling By Receptor Clustering
Nature V. 457 1019 2009
[
close entry info
]
Hetero Components
(2, 20)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
8
Ligand/Ion
SODIUM ION
2
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:241 , LEU A:242 , LYS A:274
BINDING SITE FOR RESIDUE SO4 A 10
02
AC2
SOFTWARE
GLU B:179
BINDING SITE FOR RESIDUE NA B 21
03
AC3
SOFTWARE
THR C:241 , LEU C:242 , THR C:270 , LYS C:274
BINDING SITE FOR RESIDUE SO4 C 7
04
AC4
SOFTWARE
THR E:241 , LEU E:242 , THR E:270 , LYS E:274
BINDING SITE FOR RESIDUE SO4 E 1
05
AC5
SOFTWARE
LYS E:231 , LYS G:231
BINDING SITE FOR RESIDUE SO4 E 11
06
AC6
SOFTWARE
MET G:240 , THR G:241 , LEU G:242 , THR G:270 , LYS G:274
BINDING SITE FOR RESIDUE SO4 G 2
07
AC7
SOFTWARE
GLU H:179 , GLN H:182
BINDING SITE FOR RESIDUE NA H 20
08
AC8
SOFTWARE
THR I:241 , LEU I:242 , THR I:270 , LYS I:274
BINDING SITE FOR RESIDUE SO4 I 6
09
AC9
SOFTWARE
GLU J:95 , ARG J:184
BINDING SITE FOR RESIDUE SO4 J 8
10
BC1
SOFTWARE
GLU J:179 , GLN J:182
BINDING SITE FOR RESIDUE NA J 19
11
BC2
SOFTWARE
THR K:241 , LEU K:242 , LYS K:274
BINDING SITE FOR RESIDUE SO4 K 3
12
BC3
SOFTWARE
ASN K:324 , ASN K:326 , PHE K:327 , GLU K:330
BINDING SITE FOR RESIDUE SO4 K 13
13
BC4
SOFTWARE
MET M:240 , THR M:241 , LEU M:242 , LYS M:274
BINDING SITE FOR RESIDUE SO4 M 9
14
BC5
SOFTWARE
LYS M:316 , ASN M:324 , ASN M:326 , PHE M:327 , GLU M:330
BINDING SITE FOR RESIDUE SO4 M 12
15
BC6
SOFTWARE
THR O:241 , LEU O:242 , THR O:270 , LYS O:274
BINDING SITE FOR RESIDUE SO4 O 4
16
BC7
SOFTWARE
GLU P:179
BINDING SITE FOR RESIDUE NA P 18
[
close Site info
]
SAPs(SNPs)/Variants
(25, 200)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065124 (C105W, chain B/D/F/H/J/L/N/P, )
02: VAR_013423 (Y232C, chain A/C/E/G/I/K/M/O, )
03: VAR_013424 (T241K, chain A/C/E/G/I/K/M/O, )
04: VAR_013425 (T241P, chain A/C/E/G/I/K/M/O, )
05: VAR_065128 (V249L, chain A/C/E/G/I/K/M/O, )
06: VAR_013426 (R250P, chain A/C/E/G/I/K/M/O, )
07: VAR_013427 (R250Q, chain A/C/E/G/I/K/M/O, )
08: VAR_065129 (G253D, chain A/C/E/G/I/K/M/O, )
09: VAR_065130 (G253S, chain A/C/E/G/I/K/M/O, )
10: VAR_018323 (N255D, chain A/C/E/G/I/K/M/O, )
11: VAR_013428 (A257D, chain A/C/E/G/I/K/M/O, )
12: VAR_065131 (I259R, chain A/C/E/G/I/K/M/O, )
13: VAR_013429 (D260G, chain A/C/E/G/I/K/M/O, )
14: VAR_013431 (D260V, chain A/C/E/G/I/K/M/O, )
15: VAR_013430 (D260Y, chain A/C/E/G/I/K/M/O, )
16: VAR_058910 (I262S, chain A/C/E/G/I/K/M/O, )
17: VAR_013432 (N264K, chain A/C/E/G/I/K/M/O, )
18: VAR_013433 (T270I, chain A/C/E/G/I/K/M/O, )
19: VAR_065132 (T270K, chain A/C/E/G/I/K/M/O, )
20: VAR_013434 (E272G, chain A/C/E/G/I/K/M/O, )
21: VAR_013435 (E272K, chain A/C/E/G/I/K/M/O, )
22: VAR_013436 (L278F, chain A/C/E/G/I/K/M/O, )
23: VAR_013437 (K299N, chain A/C/E/G/I/K/M/O, )
24: VAR_020942 (T305I, chain A/C/E/G/I/K/M/O, )
25: VAR_013438 (I310S, chain A/C/E/G/I/K/M/O, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065124
C
105
W
FADD_HUMAN
Disease (IEHDCM)
---
B/D/F/H/J/L/N/P
C
105
W
02
UniProt
VAR_013423
Y
232
C
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
Y
232
C
03
UniProt
VAR_013424
T
241
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
T
241
K
04
UniProt
VAR_013425
T
241
P
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
T
241
P
05
UniProt
VAR_065128
V
249
L
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
V
249
L
06
UniProt
VAR_013426
R
250
P
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
R
250
P
07
UniProt
VAR_013427
R
250
Q
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
R
250
Q
08
UniProt
VAR_065129
G
253
D
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
G
253
D
09
UniProt
VAR_065130
G
253
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
G
253
S
10
UniProt
VAR_018323
N
255
D
TNR6_HUMAN
Unclassified
---
A/C/E/G/I/K/M/O
N
255
D
11
UniProt
VAR_013428
A
257
D
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
A
257
D
12
UniProt
VAR_065131
I
259
R
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
I
259
R
13
UniProt
VAR_013429
D
260
G
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
D
260
G
14
UniProt
VAR_013431
D
260
V
TNR6_HUMAN
Disease (ALPS1A)
28929498
A/C/E/G/I/K/M/O
D
260
V
15
UniProt
VAR_013430
D
260
Y
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
D
260
Y
16
UniProt
VAR_058910
I
262
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
I
262
S
17
UniProt
VAR_013432
N
264
K
TNR6_HUMAN
Unclassified
---
A/C/E/G/I/K/M/O
N
264
K
18
UniProt
VAR_013433
T
270
I
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
T
270
I
19
UniProt
VAR_065132
T
270
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
T
270
K
20
UniProt
VAR_013434
E
272
G
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
E
272
G
21
UniProt
VAR_013435
E
272
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
E
272
K
22
UniProt
VAR_013436
L
278
F
TNR6_HUMAN
Unclassified
---
A/C/E/G/I/K/M/O
L
278
F
23
UniProt
VAR_013437
K
299
N
TNR6_HUMAN
Unclassified
---
A/C/E/G/I/K/M/O
K
299
N
24
UniProt
VAR_020942
T
305
I
TNR6_HUMAN
Polymorphism
3218611
A/C/E/G/I/K/M/O
T
305
I
25
UniProt
VAR_013438
I
310
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C/E/G/I/K/M/O
I
310
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: DEATH_DOMAIN (B:97-181,D:97-181,F:97-181,H:97-18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEATH_DOMAIN
PS50017
Death domain profile.
FADD_HUMAN
97-181
8
B:97-181
D:97-181
F:97-181
H:97-181
J:97-181
L:97-181
N:97-181
P:97-181
TNR6_HUMAN
230-314
8
A:230-314
C:230-314
E:230-314
G:230-314
I:230-314
K:230-314
M:230-314
O:230-314
[
close PROSITE info
]
Exons
(4, 32)
Info
All Exons
Exon 1.1 (B:93-96 | D:93-96 | F:93-96 | H:93...)
Exon 1.2 (B:96-191 | D:96-191 | F:96-191 | H...)
Exon 2.10 (A:223-226 | C:223-226 | E:223-226 ...)
Exon 2.11h (A:226-335 | C:226-335 | E:226-335 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
4: Boundary 2.8/2.10
5: Boundary 2.10/2.11h
6: Boundary 2.11h/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000301838
1
ENSE00001119659
chr11:
70049269-70049851
583
FADD_HUMAN
1-96
96
8
B:93-96
D:93-96
F:93-96
H:93-96
J:93-96
L:93-96
N:93-96
P:93-96
4
4
4
4
4
4
4
4
1.2
ENST00000301838
2
ENSE00001119658
chr11:
70052239-70053496
1258
FADD_HUMAN
96-208
113
8
B:96-191
D:96-191
F:96-191
H:96-191
J:96-191
L:96-191
N:96-191
P:96-191
96
96
96
96
96
96
96
96
2.2a
ENST00000355740
2a
ENSE00001857233
chr10:
90750414-90750663
250
TNR6_HUMAN
1-10
10
0
-
-
2.4
ENST00000355740
4
ENSE00001271543
chr10:
90762786-90762951
166
TNR6_HUMAN
11-66
56
0
-
-
2.5
ENST00000355740
5
ENSE00000810604
chr10:
90767457-90767594
138
TNR6_HUMAN
66-112
47
0
-
-
2.6
ENST00000355740
6
ENSE00000810606
chr10:
90768646-90768754
109
TNR6_HUMAN
112-148
37
0
-
-
2.7a
ENST00000355740
7a
ENSE00001743001
chr10:
90770296-90770357
62
TNR6_HUMAN
148-169
22
0
-
-
2.7d
ENST00000355740
7d
ENSE00001686407
chr10:
90770510-90770572
63
TNR6_HUMAN
169-190
22
0
-
-
2.8
ENST00000355740
8
ENSE00001721137
chr10:
90771756-90771838
83
TNR6_HUMAN
190-217
28
0
-
-
2.10
ENST00000355740
10
ENSE00001742441
chr10:
90773100-90773124
25
TNR6_HUMAN
218-226
9
8
A:223-226
C:223-226
E:223-226
G:223-226
I:223-226
K:223-226
M:223-226
O:223-226
4
4
4
4
4
4
4
4
2.11h
ENST00000355740
11h
ENSE00001716028
chr10:
90773876-90775542
1667
TNR6_HUMAN
226-335
110
8
A:226-335
C:226-335
E:226-335
G:226-335
I:226-335
K:226-335
M:226-335
O:226-335
110
110
110
110
110
110
110
110
[
close EXON info
]
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3ezqa_ (A:)
1b: SCOP_d3ezqc_ (C:)
1c: SCOP_d3ezqe_ (E:)
1d: SCOP_d3ezqg_ (G:)
1e: SCOP_d3ezqi_ (I:)
1f: SCOP_d3ezqk_ (K:)
1g: SCOP_d3ezqm_ (M:)
1h: SCOP_d3ezqo_ (O:)
2a: SCOP_d3ezqb_ (B:)
2b: SCOP_d3ezqd_ (D:)
2c: SCOP_d3ezqf_ (F:)
2d: SCOP_d3ezqh_ (H:)
2e: SCOP_d3ezqj_ (J:)
2f: SCOP_d3ezql_ (L:)
2g: SCOP_d3ezqn_ (N:)
2h: SCOP_d3ezqp_ (P:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DEATH domain
(37)
Superfamily
:
DEATH domain
(37)
Family
:
DEATH domain, DD
(18)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3ezqa_
A:
1b
d3ezqc_
C:
1c
d3ezqe_
E:
1d
d3ezqg_
G:
1e
d3ezqi_
I:
1f
d3ezqk_
K:
1g
d3ezqm_
M:
1h
d3ezqo_
O:
Protein domain
:
FADD (Mort1)
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d3ezqb_
B:
2b
d3ezqd_
D:
2c
d3ezqf_
F:
2d
d3ezqh_
H:
2e
d3ezqj_
J:
2f
d3ezql_
L:
2g
d3ezqn_
N:
2h
d3ezqp_
P:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3ezqB00 (B:93-191)
1b: CATH_3ezqD00 (D:93-191)
1c: CATH_3ezqF00 (F:93-191)
1d: CATH_3ezqH00 (H:93-191)
1e: CATH_3ezqJ00 (J:93-191)
1f: CATH_3ezqL00 (L:93-191)
1g: CATH_3ezqN00 (N:93-191)
1h: CATH_3ezqP00 (P:93-191)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Death Domain, Fas
(26)
Homologous Superfamily
:
Death Domain, Fas
(26)
Human (Homo sapiens)
(20)
1a
3ezqB00
B:93-191
1b
3ezqD00
D:93-191
1c
3ezqF00
F:93-191
1d
3ezqH00
H:93-191
1e
3ezqJ00
J:93-191
1f
3ezqL00
L:93-191
1g
3ezqN00
N:93-191
1h
3ezqP00
P:93-191
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
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(selected part)
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Miscellaneous
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Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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