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3EZQ
Biol. Unit 1
Info
Asym.Unit (290 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAS/FADD DEATH DOMAIN COMPLEX
Authors
:
R. Schwarzenbacher, H. Robinson, B. Stec, S. J. Riedl
Date
:
23 Oct 08 (Deposition) - 23 Dec 08 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Apoptosis, Disc, Fas, Fadd, Membrane, Receptor, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. L. Scott, B. Stec, C. Pop, M. K. Dobaczewska, J. J. Lee, E. Monosov, H. Robinson, G. S. Salvesen, R. Schwarzenbacher, S. J. Riedl
The Fas-Fadd Death Domain Complex Structure Unravels Signalling By Receptor Clustering
Nature V. 457 1019 2009
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
-1
Ligand/Ion
SODIUM ION
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:241 , LEU A:242 , LYS A:274
BINDING SITE FOR RESIDUE SO4 A 10
2
AC2
SOFTWARE
GLU B:179
BINDING SITE FOR RESIDUE NA B 21
3
AC3
SOFTWARE
THR C:241 , LEU C:242 , THR C:270 , LYS C:274
BINDING SITE FOR RESIDUE SO4 C 7
[
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]
SAPs(SNPs)/Variants
(25, 50)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_065124 (C105W, chain B/D, )
02: VAR_013423 (Y232C, chain A/C, )
03: VAR_013424 (T241K, chain A/C, )
04: VAR_013425 (T241P, chain A/C, )
05: VAR_065128 (V249L, chain A/C, )
06: VAR_013426 (R250P, chain A/C, )
07: VAR_013427 (R250Q, chain A/C, )
08: VAR_065129 (G253D, chain A/C, )
09: VAR_065130 (G253S, chain A/C, )
10: VAR_018323 (N255D, chain A/C, )
11: VAR_013428 (A257D, chain A/C, )
12: VAR_065131 (I259R, chain A/C, )
13: VAR_013429 (D260G, chain A/C, )
14: VAR_013431 (D260V, chain A/C, )
15: VAR_013430 (D260Y, chain A/C, )
16: VAR_058910 (I262S, chain A/C, )
17: VAR_013432 (N264K, chain A/C, )
18: VAR_013433 (T270I, chain A/C, )
19: VAR_065132 (T270K, chain A/C, )
20: VAR_013434 (E272G, chain A/C, )
21: VAR_013435 (E272K, chain A/C, )
22: VAR_013436 (L278F, chain A/C, )
23: VAR_013437 (K299N, chain A/C, )
24: VAR_020942 (T305I, chain A/C, )
25: VAR_013438 (I310S, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065124
C
105
W
FADD_HUMAN
Disease (IEHDCM)
---
B/D
C
105
W
02
UniProt
VAR_013423
Y
232
C
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
Y
232
C
03
UniProt
VAR_013424
T
241
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
T
241
K
04
UniProt
VAR_013425
T
241
P
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
T
241
P
05
UniProt
VAR_065128
V
249
L
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
V
249
L
06
UniProt
VAR_013426
R
250
P
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
R
250
P
07
UniProt
VAR_013427
R
250
Q
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
R
250
Q
08
UniProt
VAR_065129
G
253
D
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
G
253
D
09
UniProt
VAR_065130
G
253
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
G
253
S
10
UniProt
VAR_018323
N
255
D
TNR6_HUMAN
Unclassified
---
A/C
N
255
D
11
UniProt
VAR_013428
A
257
D
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
A
257
D
12
UniProt
VAR_065131
I
259
R
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
I
259
R
13
UniProt
VAR_013429
D
260
G
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
D
260
G
14
UniProt
VAR_013431
D
260
V
TNR6_HUMAN
Disease (ALPS1A)
28929498
A/C
D
260
V
15
UniProt
VAR_013430
D
260
Y
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
D
260
Y
16
UniProt
VAR_058910
I
262
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
I
262
S
17
UniProt
VAR_013432
N
264
K
TNR6_HUMAN
Unclassified
---
A/C
N
264
K
18
UniProt
VAR_013433
T
270
I
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
T
270
I
19
UniProt
VAR_065132
T
270
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
T
270
K
20
UniProt
VAR_013434
E
272
G
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
E
272
G
21
UniProt
VAR_013435
E
272
K
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
E
272
K
22
UniProt
VAR_013436
L
278
F
TNR6_HUMAN
Unclassified
---
A/C
L
278
F
23
UniProt
VAR_013437
K
299
N
TNR6_HUMAN
Unclassified
---
A/C
K
299
N
24
UniProt
VAR_020942
T
305
I
TNR6_HUMAN
Polymorphism
3218611
A/C
T
305
I
25
UniProt
VAR_013438
I
310
S
TNR6_HUMAN
Disease (ALPS1A)
---
A/C
I
310
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: DEATH_DOMAIN (A:230-314,C:230-314)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEATH_DOMAIN
PS50017
Death domain profile.
FADD_HUMAN
97-181
2
B:97-181
D:97-181
-
-
-
-
-
-
TNR6_HUMAN
230-314
2
A:230-314
C:230-314
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3ezqa_ (A:)
1b: SCOP_d3ezqc_ (C:)
1c: SCOP_d3ezqe_ (E:)
1d: SCOP_d3ezqg_ (G:)
1e: SCOP_d3ezqi_ (I:)
1f: SCOP_d3ezqk_ (K:)
1g: SCOP_d3ezqm_ (M:)
1h: SCOP_d3ezqo_ (O:)
2a: SCOP_d3ezqb_ (B:)
2b: SCOP_d3ezqd_ (D:)
2c: SCOP_d3ezqf_ (F:)
2d: SCOP_d3ezqh_ (H:)
2e: SCOP_d3ezqj_ (J:)
2f: SCOP_d3ezql_ (L:)
2g: SCOP_d3ezqn_ (N:)
2h: SCOP_d3ezqp_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DEATH domain
(37)
Superfamily
:
DEATH domain
(37)
Family
:
DEATH domain, DD
(18)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3ezqa_
A:
1b
d3ezqc_
C:
1c
d3ezqe_
E:
1d
d3ezqg_
G:
1e
d3ezqi_
I:
1f
d3ezqk_
K:
1g
d3ezqm_
M:
1h
d3ezqo_
O:
Protein domain
:
FADD (Mort1)
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d3ezqb_
B:
2b
d3ezqd_
D:
2c
d3ezqf_
F:
2d
d3ezqh_
H:
2e
d3ezqj_
J:
2f
d3ezql_
L:
2g
d3ezqn_
N:
2h
d3ezqp_
P:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3ezqB00 (B:93-191)
1b: CATH_3ezqD00 (D:93-191)
1c: CATH_3ezqF00 (F:93-191)
1d: CATH_3ezqH00 (H:93-191)
1e: CATH_3ezqJ00 (J:93-191)
1f: CATH_3ezqL00 (L:93-191)
1g: CATH_3ezqN00 (N:93-191)
1h: CATH_3ezqP00 (P:93-191)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Death Domain, Fas
(26)
Homologous Superfamily
:
Death Domain, Fas
(26)
Human (Homo sapiens)
(20)
1a
3ezqB00
B:93-191
1b
3ezqD00
D:93-191
1c
3ezqF00
F:93-191
1d
3ezqH00
H:93-191
1e
3ezqJ00
J:93-191
1f
3ezqL00
L:93-191
1g
3ezqN00
N:93-191
1h
3ezqP00
P:93-191
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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]
Atom Selection
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Backbone
Sidechain
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Asymmetric Unit 1
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