PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3EY4
Biol. Unit 2
Info
Asym.Unit (174 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (86 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FURTHER STUDIES WITH THE 2-AMINO-1,3-THIAZOL-4(5H)-ONE CLASS OF 11-HYDROXYSTEROID DEHYDROGENASE TYPE 1 (11-HSD1) INHIBITORS: REDUCING PREGNANE X RECEPTOR (PXR) ACTIVITY AND EXPLORING ACTIVITY IN A MONKEY PHARMACODYNAMIC MODEL
Authors
:
J. D. Zhang, S. R. Jordan, V. Li
Date
:
17 Oct 08 (Deposition) - 11 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Endoplasmic Reticulum, Glycoprotein, Lipid Metabolism, Membrane, Nadp, Oxidoreductase, Polymorphism, Signal-Anchor, Steroid Metabolism, Transmembrane, Alpha Beta, 3-Layer(Aba) Sandwich, Rossmann Fold, Nad(P)-Binding Rossmann-Like Domain, Inhibitor, Drug Design
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Christopher, M. D. Bartberger, E. A. Bercot, M. Chen, R. Cupples, M. Emery, J. Fretland, A. Guram, C. Hale, N. H. Han, D. Hickman, R. W. Hungate, M. Hayashi, R. Komorowski, Q. Y. Liu, G. Matsumoto, D. J. St. Jean, S. Ursu, M. Voniant, G. F. Xu, Q. P. Ye, C. Yuan, J. D. Zhang, X. P. Zhang, H. Tu, M. H. Wang
Further Studies With The 2-Amino-1, 3-Thiazol-4(5H)-One Class Of 11-Hydroxysteroid Dehydrogenase Type 1 (11-Hsd1) Inhibitors: Reducing Pregnane X Receptor (Pxr) Activity And Exploring Activity In A Monkey Pharmacodynamic Model
To Be Published 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: (5S)-2-{[(1S)-1-(4-FLUOROPHENYL)ET... (352a)
1b: (5S)-2-{[(1S)-1-(4-FLUOROPHENYL)ET... (352b)
1c: (5S)-2-{[(1S)-1-(4-FLUOROPHENYL)ET... (352c)
1d: (5S)-2-{[(1S)-1-(4-FLUOROPHENYL)ET... (352d)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
2d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
352
2
Ligand/Ion
(5S)-2-{[(1S)-1-(4-FLUOROPHENYL)ETHYL]AMINO}-5-(1-HYDROXY-1-METHYLETHYL)-5-METHYL-1,3-THIAZOL-4(5H)-ONE
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY C:41 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ALA C:65 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , 352 C:602
BINDING SITE FOR RESIDUE NDP C 503
2
AC4
SOFTWARE
GLY D:41 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , HIS D:120 , ILE D:121 , TYR D:147 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , 352 D:604
BINDING SITE FOR RESIDUE NDP D 504
3
AC6
SOFTWARE
THR C:124 , SER C:125 , LEU C:126 , SER C:170 , LEU C:171 , ALA C:172 , TYR C:177 , VAL C:180 , TYR C:183 , LEU C:217 , MET C:233 , NDP C:503
BINDING SITE FOR RESIDUE 352 C 602
4
AC8
SOFTWARE
THR D:124 , SER D:125 , LEU D:126 , SER D:170 , LEU D:171 , ALA D:172 , TYR D:177 , TYR D:183 , LEU D:217 , ALA D:226 , NDP D:504
BINDING SITE FOR RESIDUE 352 D 604
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035845 (V148E, chain C/D, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
C/D
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
C/D
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (C:170-198,D:170-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
2
-
-
C:170-198
D:170-198
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ey4a_ (A:)
1b: SCOP_d3ey4b_ (B:)
1c: SCOP_d3ey4c_ (C:)
1d: SCOP_d3ey4d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
11-beta-hydroxysteroid dehydrogenase 1
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3ey4a_
A:
1b
d3ey4b_
B:
1c
d3ey4c_
C:
1d
d3ey4d_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3ey4B00 (B:27-281)
1b: CATH_3ey4C00 (C:26-281)
1c: CATH_3ey4A00 (A:25-283)
1d: CATH_3ey4D00 (D:25-285)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
3ey4B00
B:27-281
1b
3ey4C00
C:26-281
1c
3ey4A00
A:25-283
1d
3ey4D00
D:25-285
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (174 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3EY4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help