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3EVF
Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ME7-GPPPA COMPLEX OF YELLOW FEVER VIRUS METHYLTRANSFERASE AND S-ADENOSYL-L-HOMOCYSTEINE
Authors
:
A. A. Thompson, B. J. Geiss, O. B. Peersen
Date
:
13 Oct 08 (Deposition) - 06 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Yellow Fever Virus, Ns5 Methyltransferase, Rna Cap Binding, Atp- Binding, Capsid Protein, Cleavage On Pair Of Basic Residues, Endoplasmic Reticulum, Envelope Protein, Glycoprotein, Helicase, Hydrolase, Membrane, Metal-Binding, Multifunctional Enzyme, Nucleotide-Binding, Nucleotidyltransferase, Nucleus, Phosphoprotein, Protease, Ribonucleoprotein, Rna Replication, Rna-Binding, Rna- Directed Rna Polymerase, Secreted, Serine Protease, Transmembrane, Viral Nucleoprotein, Virion, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
B. J. Geiss, A. A. Thompson, A. J. Andrews, R. L. Sons, H. H. Gari, S. M. Keenan, O. B. Peersen
Analysis Of Flavivirus Ns5 Methyltransferase Cap Binding.
J. Mol. Biol. V. 385 1643 2009
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAa)
1b: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAb)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GTA
2
Ligand/Ion
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
2
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:13 , LEU A:16 , ASN A:17 , LEU A:19 , LYS A:21 , PHE A:24 , LYS A:28 , SER A:151 , SER A:152 , SER A:215 , HOH A:516 , HOH A:669 , HOH A:685 , HOH A:708
BINDING SITE FOR RESIDUE GTA A 902
2
AC2
SOFTWARE
ARG A:37 , ARG A:41 , SER A:56 , ARG A:57 , ARG A:84 , HOH A:738
BINDING SITE FOR RESIDUE GTA A 903
3
AC3
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:83 , GLY A:86 , TRP A:87 , THR A:104 , LEU A:105 , HIS A:110 , THR A:130 , ASP A:131 , ILE A:132 , HIS A:133 , ASP A:146 , ILE A:147 , HOH A:520 , HOH A:547 , HOH A:579 , HOH A:697
BINDING SITE FOR RESIDUE SAH A 901
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_YEFV1_017 (R22Q, chain A, )
2: VAR_POLG_YEFV1_018 (P137S, chain A, )
3: VAR_POLG_YEFV1_019 (V155I, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_YEFV1_017
*
R
2528
Q
POLG_YEFV1
---
---
A
R
22
Q
2
UniProt
VAR_POLG_YEFV1_018
*
P
2643
S
POLG_YEFV1
---
---
A
P
137
S
3
UniProt
VAR_POLG_YEFV1_019
*
V
2661
I
POLG_YEFV1
---
---
A
V
155
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3evfa_ (A:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Yellow fever virus [TaxId: 11090]
(6)
1a
d3evfa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3evfA00 (A:6-266)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Yellow fever virus 17d. Organism_taxid: 11090. Strain: 17d.
(6)
1a
3evfA00
A:6-266
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (53 KB)
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