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3ETQ
Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (298 KB)
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(1)
Title
:
X-RAY STRUCTURE OF CYSTEINE-FREE FRAGMENT OF MHCN2 C-TERMINAL REGION FROM AMINO ACIDS 443-630 INCLUDING C508N, C584S, AND C601S MUTATIONS
Authors
:
G. E. Flynn
Date
:
08 Oct 08 (Deposition) - 23 Jun 09 (Release) - 14 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Hcn, Ion Channel, Camp, Cyclic Nucleotide Binding Domain, Beta Roll, C-Linker, Camp-Binding, Glycoprotein, Ion Transport, Ionic Channel, Membrane, Nucleotide-Binding, Phosphoprotein, Potassium, Potassium Channel, Potassium Transport, Sodium, Sodium Channel, Sodium Transport, Transmembrane, Transport, Voltage-Gated Channel, Transport Protein
(Keyword Search:
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Reference
:
J. W. Taraska, M. C. Puljung, N. B. Olivier, G. E. Flynn, W. N. Zagotta
Mapping The Structure And Conformational Movements Of Proteins With Transition Metal Ion Fret.
Nat. Methods V. 6 532 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
1b: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMP
2
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:564 , MET A:572 , PHE A:580 , GLY A:581 , GLU A:582 , ILE A:583 , SER A:584 , ARG A:591 , THR A:592 , ALA A:593 , ARG A:632 , ILE A:636 , HOH A:724
BINDING SITE FOR RESIDUE CMP A 1
2
AC2
SOFTWARE
VAL B:564 , MET B:572 , PHE B:580 , GLY B:581 , GLU B:582 , ILE B:583 , SER B:584 , ARG B:591 , THR B:592 , ALA B:593 , ARG B:632 , ARG B:635 , HOH B:777
BINDING SITE FOR RESIDUE CMP B 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:517-623,B:517-623)
2: CNMP_BINDING_1 (A:544-560,B:544-560)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
HCN2_MOUSE
517-623
2
A:517-623
B:517-623
2
CNMP_BINDING_1
PS00888
Cyclic nucleotide-binding domain signature 1.
HCN2_MOUSE
544-560
2
A:544-560
B:544-560
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Exons
(4, 8)
Info
All Exons
Exon 1.4 (A:443-452 | B:444-452)
Exon 1.5 (A:453-501 | B:453-501)
Exon 1.6 (A:502-582 | B:502-582 (gaps))
Exon 1.7 (A:582-636 | B:582-635)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000099513
1
ENSMUSE00000332759
chr10:
79179379-79179964
586
HCN2_MOUSE
1-184
184
0
-
-
1.2
ENSMUST00000099513
2
ENSMUSE00000574999
chr10:
79187133-79187556
424
HCN2_MOUSE
184-325
142
0
-
-
1.3
ENSMUST00000099513
3
ENSMUSE00000574998
chr10:
79188892-79189053
162
HCN2_MOUSE
326-379
54
0
-
-
1.4
ENSMUST00000099513
4
ENSMUSE00000574997
chr10:
79191638-79191856
219
HCN2_MOUSE
380-452
73
2
A:443-452
B:444-452
10
9
1.5
ENSMUST00000099513
5
ENSMUSE00000574996
chr10:
79193592-79193738
147
HCN2_MOUSE
453-501
49
2
A:453-501
B:453-501
49
49
1.6
ENSMUST00000099513
6
ENSMUSE00000574995
chr10:
79196416-79196656
241
HCN2_MOUSE
502-582
81
2
A:502-582
B:502-582 (gaps)
81
81
1.7
ENSMUST00000099513
7
ENSMUSE00000574994
chr10:
79196808-79196972
165
HCN2_MOUSE
582-637
56
2
A:582-636
B:582-635
55
54
1.8b
ENSMUST00000099513
8b
ENSMUSE00000642019
chr10:
79197603-79198853
1251
HCN2_MOUSE
637-863
227
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3etqa_ (A:)
1b: SCOP_d3etqb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
cAMP-binding domain
(78)
Protein domain
:
automated matches
(22)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d3etqa_
A:
1b
d3etqb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3etqB01 (B:444-508)
1b: CATH_3etqA01 (A:443-508)
2a: CATH_3etqA02 (A:509-636)
2b: CATH_3etqB02 (B:509-635)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(8)
Mouse (Mus musculus)
(2)
1a
3etqB01
B:444-508
1b
3etqA01
A:443-508
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Mouse (Mus musculus)
(6)
2a
3etqA02
A:509-636
2b
3etqB02
B:509-635
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Pfam Domains
(0, 0)
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Asym.Unit (82 KB)
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