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Getting 'Exon' information from database.
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Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
2 ANGSTROM XRAY STRUCTURE OF THE NOTCH1 NEGATIVE REGULATORY REGION (NRR)
Authors
:
W. R. Gordon, S. C. Blacklow
Date
:
08 Oct 08 (Deposition) - 23 Dec 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha-Beta Sandwich, Hd Domain, Lnr Repeat, Calcium-Binding, Sea Domain, Autoinhibition, Activator, T-All, Leukemia, Oncogene, Ank Repeat, Developmental Protein, Differentiation, Egf-Like Domain, Glycoprotein, Membrane, Metal-Binding, Notch Signaling Pathway, Nucleus, Phosphoprotein, Receptor, Transcription, Transcription Regulation, Transmembrane, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. R. Gordon, M. Roy, D. Vardar-Ulu, M. Garfinkel, M. R. Mansour, J. C. Aster, S. C. Blacklow
Structure Of The Notch1-Negative Regulatory Region: Implications For Normal Activation And Pathogenic Signaling In T-All.
Blood V. 113 4381 2009
[
close entry info
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
GOL
7
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:1458 , ASN A:1461 , VAL A:1463 , ASP A:1476 , ASP A:1479
BINDING SITE FOR RESIDUE CA A2001
02
AC2
SOFTWARE
TYR A:1500 , ASP A:1503 , HIS A:1505 , ASP A:1507 , ASP A:1518 , ASP A:1521
BINDING SITE FOR RESIDUE CA A2002
03
AC3
SOFTWARE
HIS A:1540 , ASP A:1543 , HIS A:1545 , ASP A:1547 , ASP A:1558 , ASP A:1561
BINDING SITE FOR RESIDUE CA A2003
04
AC4
SOFTWARE
HIS A:1471 , TRP A:1475 , ASP A:1486 , TRP A:1488
BINDING SITE FOR RESIDUE CL A 2
05
AC5
SOFTWARE
ASP B:1458 , ASN B:1461 , VAL B:1463 , ASP B:1476 , ASP B:1479
BINDING SITE FOR RESIDUE CA B2001
06
AC6
SOFTWARE
TYR B:1500 , ASP B:1503 , HIS B:1505 , ASP B:1507 , ASP B:1518 , ASP B:1521
BINDING SITE FOR RESIDUE CA B2002
07
AC7
SOFTWARE
SER A:1542 , GLY A:1559 , ASP A:1561
BINDING SITE FOR RESIDUE GOL A 1
08
AC8
SOFTWARE
HIS B:1540 , ASP B:1543 , HIS B:1545 , ASP B:1547 , ASP B:1558 , ASP B:1561
BINDING SITE FOR RESIDUE CA B2003
09
AC9
SOFTWARE
ARG A:1609 , MET A:1616 , GOL A:1737
BINDING SITE FOR RESIDUE GOL A1735
10
BC1
SOFTWARE
ILE A:1715 , PRO A:1716
BINDING SITE FOR RESIDUE GOL A1736
11
BC2
SOFTWARE
HOH A:212 , VAL A:1727 , GOL A:1735
BINDING SITE FOR RESIDUE GOL A1737
12
BC3
SOFTWARE
HIS B:1471 , TRP B:1475 , ASP B:1486 , PRO B:1487 , TRP B:1488
BINDING SITE FOR RESIDUE CL B 1
13
BC4
SOFTWARE
HOH B:123 , SER B:1542 , GLY B:1559 , LEU B:1560 , ASP B:1561
BINDING SITE FOR RESIDUE GOL B1735
14
BC5
SOFTWARE
ILE B:1715 , PRO B:1716
BINDING SITE FOR RESIDUE GOL B1736
15
BC6
SOFTWARE
HOH B:202 , MET B:1616 , VAL B:1727
BINDING SITE FOR RESIDUE GOL B1737
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071961 (C1497Y, chain A/B, )
2: VAR_046618 (V1672I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071961
C
1496
Y
NOTC1_HUMAN
Disease (AOS5)
---
A/B
C
1497
Y
2
UniProt
VAR_046618
V
1671
I
NOTC1_HUMAN
Polymorphism
2229968
A/B
V
1672
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LNR (A:1450-1490,B:1450-1490|A:1491-153...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LNR
PS50258
LNR (Lin-12/Notch) repeat profile.
NOTC1_HUMAN
1449-1489
1490-1531
1532-1571
6
A:1450-1490
B:1450-1490
A:1491-1532
B:1491-1532
A:1533-1572
B:1533-1572
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.25 (A:1449-1530 | B:1449-1530)
Exon 1.26a (A:1530-1674 (gaps) | B:1530-1674 (...)
Exon 1.27 (A:1674-1724 | B:1674-1724)
Exon 1.28b (A:1724-1727 | B:1724-1727)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.24/1.25
2: Boundary 1.25/1.26a
3: Boundary 1.26a/1.27
4: Boundary 1.27/1.28b
5: Boundary 1.28b/1.29
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000277541
1
ENSE00001247593
chr9:
139440314-139440178
137
NOTC1_HUMAN
1-21
21
0
-
-
1.2
ENST00000277541
2
ENSE00001124718
chr9:
139438554-139438476
79
NOTC1_HUMAN
21-47
27
0
-
-
1.3a
ENST00000277541
3a
ENSE00001042401
chr9:
139418431-139418169
263
NOTC1_HUMAN
47-135
89
0
-
-
1.4a
ENST00000277541
4a
ENSE00000985020
chr9:
139417640-139417302
339
NOTC1_HUMAN
135-248
114
0
-
-
1.5
ENST00000277541
5
ENSE00001378880
chr9:
139414017-139413895
123
NOTC1_HUMAN
248-289
42
0
-
-
1.6
ENST00000277541
6
ENSE00000985022
chr9:
139413276-139413043
234
NOTC1_HUMAN
289-367
79
0
-
-
1.7
ENST00000277541
7
ENSE00000985023
chr9:
139412744-139412589
156
NOTC1_HUMAN
367-419
53
0
-
-
1.8
ENST00000277541
8
ENSE00000985024
chr9:
139412389-139412204
186
NOTC1_HUMAN
419-481
63
0
-
-
1.9
ENST00000277541
9
ENSE00000985025
chr9:
139411837-139411724
114
NOTC1_HUMAN
481-519
39
0
-
-
1.10
ENST00000277541
10
ENSE00000985026
chr9:
139410546-139410433
114
NOTC1_HUMAN
519-557
39
0
-
-
1.11
ENST00000277541
11
ENSE00000985027
chr9:
139410168-139409935
234
NOTC1_HUMAN
557-635
79
0
-
-
1.12
ENST00000277541
12
ENSE00000985028
chr9:
139409852-139409742
111
NOTC1_HUMAN
635-672
38
0
-
-
1.13
ENST00000277541
13
ENSE00000985029
chr9:
139409154-139408962
193
NOTC1_HUMAN
672-736
65
0
-
-
1.14
ENST00000277541
14
ENSE00000985030
chr9:
139407989-139407844
146
NOTC1_HUMAN
736-785
50
0
-
-
1.15
ENST00000277541
15
ENSE00000985031
chr9:
139407586-139407473
114
NOTC1_HUMAN
785-823
39
0
-
-
1.16
ENST00000277541
16
ENSE00000985032
chr9:
139405723-139405604
120
NOTC1_HUMAN
823-863
41
0
-
-
1.17
ENST00000277541
17
ENSE00000985033
chr9:
139405257-139405105
153
NOTC1_HUMAN
863-914
52
0
-
-
1.18
ENST00000277541
18
ENSE00000985034
chr9:
139404413-139404185
229
NOTC1_HUMAN
914-990
77
0
-
-
1.19
ENST00000277541
19
ENSE00000985035
chr9:
139403523-139403322
202
NOTC1_HUMAN
990-1057
68
0
-
-
1.20
ENST00000277541
20
ENSE00000985036
chr9:
139402837-139402684
154
NOTC1_HUMAN
1058-1109
52
0
-
-
1.21
ENST00000277541
21
ENSE00000985037
chr9:
139402591-139402407
185
NOTC1_HUMAN
1109-1170
62
0
-
-
1.22
ENST00000277541
22
ENSE00000985038
chr9:
139401889-139401757
133
NOTC1_HUMAN
1171-1215
45
0
-
-
1.23
ENST00000277541
23
ENSE00000985039
chr9:
139401425-139401168
258
NOTC1_HUMAN
1215-1301
87
0
-
-
1.24
ENST00000277541
24
ENSE00000985040
chr9:
139401091-139400979
113
NOTC1_HUMAN
1301-1338
38
0
-
-
1.25
ENST00000277541
25
ENSE00000985041
chr9:
139400333-139399762
572
NOTC1_HUMAN
1339-1529
191
2
A:1449-1530
B:1449-1530
82
82
1.26a
ENST00000277541
26a
ENSE00000985042
chr9:
139399556-139399125
432
NOTC1_HUMAN
1529-1673
145
2
A:1530-1674 (gaps)
B:1530-1674 (gaps)
145
145
1.27
ENST00000277541
27
ENSE00001124572
chr9:
139397782-139397634
149
NOTC1_HUMAN
1673-1723
51
2
A:1674-1724
B:1674-1724
51
51
1.28b
ENST00000277541
28b
ENSE00000985044
chr9:
139396940-139396724
217
NOTC1_HUMAN
1723-1795
73
2
A:1724-1727
B:1724-1727
4
4
1.29
ENST00000277541
29
ENSE00000985045
chr9:
139396540-139396453
88
NOTC1_HUMAN
1795-1824
30
0
-
-
1.30
ENST00000277541
30
ENSE00000985046
chr9:
139396365-139396200
166
NOTC1_HUMAN
1825-1880
56
0
-
-
1.31
ENST00000277541
31
ENSE00000985047
chr9:
139395299-139395004
296
NOTC1_HUMAN
1880-1978
99
0
-
-
1.32
ENST00000277541
32
ENSE00000985048
chr9:
139393711-139393564
148
NOTC1_HUMAN
1979-2028
50
0
-
-
1.33
ENST00000277541
33
ENSE00000985049
chr9:
139393448-139393351
98
NOTC1_HUMAN
2028-2060
33
0
-
-
1.34
ENST00000277541
34
ENSE00001247584
chr9:
139392010-139388896
3115
NOTC1_HUMAN
2061-2555
495
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (41 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
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