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3ETL
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
RADA RECOMBINASE FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH AMPPNP
Authors
:
Y. Li, Y. He, Y. Luo
Date
:
08 Oct 08 (Deposition) - 05 May 09 (Release) - 07 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rada, Strand Exchange Protein, Atpase, Recombinase, Atp Analogue, Atp-Binding, Dna Damage, Dna Recombination, Dna- Binding, Nucleotide-Binding, Dna Binding Protein, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Li, Y. He, Y. Luo
Conservation Of A Conformational Switch In Rada Recombinase From Methanococcus Maripaludis.
Acta Crystallogr. , Sect. D V. 65 602 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:107 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , GLN A:113 , ARG A:158 , GLN A:161 , GLN A:257 , TYR A:301 , ASP A:302 , SER A:303 , PRO A:304 , HIS A:305 , LEU A:306 , PRO A:307 , ASP A:308 , THR A:316 , GLU A:317 , MG A:501 , HOH A:602 , HOH A:608
BINDING SITE FOR RESIDUE ANP A 401
2
AC2
SOFTWARE
THR A:112 , ANP A:401 , HOH A:601 , HOH A:602 , HOH A:603
BINDING SITE FOR RESIDUE MG A 501
3
AC3
SOFTWARE
GLN A:98 , ASP A:246 , HOH A:604 , HOH A:605 , HOH A:606 , HOH A:607
BINDING SITE FOR RESIDUE MG A 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:76-258,A:76-258)
2: RECA_3 (A:279-322,A:279-322)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RADA_METMI
76-258
1
A:76-258
RADA_METMP
76-258
1
A:76-258
2
RECA_3
PS50163
RecA family profile 2.
RADA_METMI
263-322
1
A:279-322
RADA_METMP
263-322
1
A:279-322
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3etla1 (A:2-63)
2a: SCOP_d3etla2 (A:64-322)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
Rad51 N-terminal domain-like
(25)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Methanococcus maripaludis [TaxId: 39152]
(3)
1a
d3etla1
A:2-63
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Methanococcus maripaludis [TaxId: 39152]
(3)
2a
d3etla2
A:64-322
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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