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3ETC
Biol. Unit 3
Info
Asym.Unit (190 KB)
Biol.Unit 1 (182 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (94 KB)
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(1)
Title
:
2.1 A STRUCTURE OF ACYL-ADENYLATE SYNTHETASE FROM METHANOSARCINA ACETIVORANS CONTAINING A LINK BETWEEN LYS256 AND CYS298
Authors
:
M. B. Shah, A. M. Gulick, K. S. Smith, C. Ingram-Smith
Date
:
07 Oct 08 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Adenylate-Forming Acyl-Coa Synthetase Ligase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Shah, C. Ingram-Smith, L. L. Cooper, J. Qu, Y. Meng, K. S. Smith, A. M. Gulick
The 2. 1 A Crystal Structure Of An Acyl-Coa Synthetase From Methanosarcina Acetivorans Reveals An Alternate Acyl-Bindin Pocket For Small Branched Acyl Substrates.
Proteins V. 77 685 2009
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3a: FORMYL GROUP (FORa)
3b: FORMYL GROUP (FORb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: NITRATE ION (NO3a)
6b: NITRATE ION (NO3b)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
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Label:
No.
Name
Count
Type
Full Name
1
1PE
-1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
FOR
1
Mod. Residue
FORMYL GROUP
4
GOL
3
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
NO3
1
Ligand/Ion
NITRATE ION
7
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(13, 13)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASN A:512 , ASP A:516 , LYS A:519 , TYR A:527 , GLY B:394 , GLU B:396
BINDING SITE FOR RESIDUE 1PE A 995
02
AC5
SOFTWARE
SER A:97 , TYR A:247 , THR A:248 , VAL A:249 , ALA A:250 , LYS A:261 , VAL A:274 , TYR A:275 , TYR A:277 , ASP A:278 , HOH A:1179 , HOH A:1203 , GLU B:392
BINDING SITE FOR RESIDUE EPE A 996
03
AC6
SOFTWARE
VAL A:413 , TRP A:426 , HIS A:427 , ASP A:428 , GLY A:429 , TYR A:430 , GLU B:132 , CYS B:158
BINDING SITE FOR RESIDUE EPE A 997
04
AC7
SOFTWARE
HOH A:1193 , HOH A:1194 , HOH A:1195 , HOH A:1196 , HOH B:1414 , HOH B:1415
BINDING SITE FOR RESIDUE MG A 1000
05
BC4
SOFTWARE
TRP B:237 , GLN B:238 , THR B:248 , LYS B:256 , CYS B:298
BINDING SITE FOR RESIDUE FOR B 999
06
BC5
SOFTWARE
ASP B:57 , ASN B:284 , GLU B:287 , LYS B:288
BINDING SITE FOR RESIDUE PGE B 992
07
BC6
SOFTWARE
TRP B:259 , PHE B:350 , GLY B:351 , THR B:353 , GOL B:1003 , GOL B:1004
BINDING SITE FOR RESIDUE PGE B 993
08
BC7
SOFTWARE
GLU A:392 , SER B:97 , TYR B:247 , THR B:248 , VAL B:249 , ALA B:250 , LYS B:261 , VAL B:274 , TYR B:275 , TYR B:277 , ASP B:278 , HOH B:1237 , HOH B:1306
BINDING SITE FOR RESIDUE EPE B 998
09
BC8
SOFTWARE
HOH A:1198 , HOH A:1199 , HOH B:1419
BINDING SITE FOR RESIDUE MG B 1000
10
BC9
SOFTWARE
ARG B:125 , ASP B:126 , ARG B:130 , PHE B:216 , PRO B:217 , GLU B:466 , THR B:522 , LYS B:526
BINDING SITE FOR RESIDUE NO3 B 1001
11
CC1
SOFTWARE
SER B:210 , SER B:211 , GLY B:212 , GLU B:354 , TYR B:415 , ARG B:421 , HOH B:1135 , HOH B:1320 , HOH B:1409
BINDING SITE FOR RESIDUE GOL B 1002
12
CC2
SOFTWARE
GLU B:328 , GLU B:348 , ILE B:372 , PHE B:447 , PGE B:993 , HOH B:1131 , HOH B:1192 , HOH B:1194
BINDING SITE FOR RESIDUE GOL B 1003
13
CC3
SOFTWARE
GLY B:351 , GLN B:352 , ASP B:435 , PHE B:447 , ARG B:450 , LYS B:461 , PGE B:993
BINDING SITE FOR RESIDUE GOL B 1004
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SAPs(SNPs)/Variants
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (190 KB)
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