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3ES8
Asym. Unit
Info
Asym.Unit (511 KB)
Biol.Unit 1 (505 KB)
Biol.Unit 2 (132 KB)
Biol.Unit 3 (132 KB)
Biol.Unit 4 (132 KB)
Biol.Unit 5 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIVERGENT ENOLASE FROM OCEANOBACILLUS IHEYENSIS COMPLEXED WITH MG AND L-MALATE.
Authors
:
A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
04 Oct 08 (Deposition) - 21 Oct 08 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,H (1x)
Keywords
:
Structural Genomics, Nysgrc, Target 9375A, Enolase Superfamily, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Isomerase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Rakus, C. Kalyanaraman, A. A. Fedorov, E. V. Fedorov, F. P. Mills-Groninger, R. Toro, J. Bonanno, K. Bain, J. M. Sauder, S. K. Burley, S. C. Almo, M. P. Jacobson, J. A. Gerlt
Computation-Facilitated Assignment Of The Function In The Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase From Oceanobacillus Iheyensis .
Biochemistry V. 48 11546 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRa)
1b: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRb)
1c: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRc)
1d: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRd)
1e: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRe)
1f: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRf)
1g: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRg)
1h: (2S)-2-HYDROXYBUTANEDIOIC ACID (LMRh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LMR
8
Ligand/Ion
(2S)-2-HYDROXYBUTANEDIOIC ACID
2
MG
8
Ligand/Ion
MAGNESIUM ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:15 , ASP A:42 , HIS A:45 , TYR A:89 , TYR A:90 , TYR A:164 , THR A:297 , GLN A:298 , ARG A:385 , MG A:393 , HOH A:468 , HOH A:472
BINDING SITE FOR RESIDUE LMR A 392
02
AC2
SOFTWARE
ASP A:42 , HIS A:45 , THR A:297 , LMR A:392
BINDING SITE FOR RESIDUE MG A 393
03
AC3
SOFTWARE
ARG B:15 , ASP B:42 , HIS B:45 , TYR B:89 , TYR B:90 , TYR B:164 , THR B:297 , GLN B:298 , ARG B:385 , MG B:393 , HOH B:439 , HOH B:443
BINDING SITE FOR RESIDUE LMR B 392
04
AC4
SOFTWARE
ASP B:42 , HIS B:45 , THR B:297 , LMR B:392
BINDING SITE FOR RESIDUE MG B 393
05
AC5
SOFTWARE
ARG C:15 , ASP C:42 , HIS C:45 , TYR C:89 , TYR C:90 , PHE C:135 , TYR C:164 , THR C:297 , GLN C:298 , ARG C:385 , MG C:393
BINDING SITE FOR RESIDUE LMR C 392
06
AC6
SOFTWARE
ASP C:42 , HIS C:45 , THR C:297 , LMR C:392
BINDING SITE FOR RESIDUE MG C 393
07
AC7
SOFTWARE
ARG D:15 , ASP D:42 , HIS D:45 , TYR D:89 , TYR D:90 , TYR D:164 , THR D:297 , GLN D:298 , ARG D:385 , MG D:393 , HOH D:452 , HOH D:454
BINDING SITE FOR RESIDUE LMR D 392
08
AC8
SOFTWARE
ASP D:42 , HIS D:45 , THR D:297 , LMR D:392
BINDING SITE FOR RESIDUE MG D 393
09
AC9
SOFTWARE
ARG E:15 , ASP E:42 , HIS E:45 , TYR E:89 , TYR E:90 , TYR E:164 , THR E:297 , GLN E:298 , ARG E:385 , MG E:393 , HOH E:457 , HOH E:460
BINDING SITE FOR RESIDUE LMR E 392
10
BC1
SOFTWARE
ASP E:42 , HIS E:45 , THR E:297 , LMR E:392
BINDING SITE FOR RESIDUE MG E 393
11
BC2
SOFTWARE
ARG F:15 , ASP F:42 , HIS F:45 , TYR F:89 , TYR F:90 , TYR F:164 , THR F:297 , GLN F:298 , ARG F:385 , MG F:393 , HOH F:464
BINDING SITE FOR RESIDUE LMR F 392
12
BC3
SOFTWARE
ASP F:42 , HIS F:45 , THR F:297 , LMR F:392
BINDING SITE FOR RESIDUE MG F 393
13
BC4
SOFTWARE
ARG G:15 , ASP G:42 , HIS G:45 , TYR G:89 , TYR G:90 , TYR G:164 , THR G:297 , GLN G:298 , ARG G:385 , MG G:393 , HOH G:431 , HOH G:455 , HOH G:456
BINDING SITE FOR RESIDUE LMR G 392
14
BC5
SOFTWARE
ASP G:42 , HIS G:45 , THR G:297 , LMR G:392
BINDING SITE FOR RESIDUE MG G 393
15
BC6
SOFTWARE
ARG H:15 , ASP H:42 , HIS H:45 , TYR H:89 , TYR H:90 , PHE H:135 , TYR H:164 , THR H:297 , GLN H:298 , ARG H:385 , MG H:393 , HOH H:442 , HOH H:445
BINDING SITE FOR RESIDUE LMR H 392
16
BC7
SOFTWARE
ASP H:42 , HIS H:45 , THR H:297 , LMR H:392
BINDING SITE FOR RESIDUE MG H 393
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (511 KB)
Header - Asym.Unit
Biol.Unit 1 (505 KB)
Header - Biol.Unit 1
Biol.Unit 2 (132 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
Biol.Unit 4 (132 KB)
Header - Biol.Unit 4
Biol.Unit 5 (133 KB)
Header - Biol.Unit 5
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