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3ERP
Biol. Unit 3
Info
Asym.Unit (140 KB)
Biol.Unit 1 (524 KB)
Biol.Unit 2 (274 KB)
Biol.Unit 3 (255 KB)
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(1)
Title
:
STRUCTURE OF IDP01002, A PUTATIVE OXIDOREDUCTASE FROM AND ESSENTIAL GENE OF SALMONELLA TYPHIMURIUM
Authors
:
A. U. Singer, G. Minasov, E. Evdokimova, J. S. Brunzelle, M. Kudritska, A. M. Edwards, W. F. Anderson, A. Savchenko, Center For Structural Of Infectious Diseases (Csgid)
Date
:
02 Oct 08 (Deposition) - 04 Nov 08 (Release) - 15 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Biol. Unit 2: A (4x)
Biol. Unit 3: B (4x)
Keywords
:
Funded By The National Institute Of Allergy And Infectious Diseases Of Nih Contract Number Hhsn272200700058C, Predicted Oxidoreductase, Essential Gene, Salmonella, Molecular Replacement, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kim, R. Flick, J. Brunzelle, A. Singer, E. Evdokimova, G. Brown, J. C. Joo, G. A. Minasov, W. F. Anderson, R. Mahadevan, A. Savchenko, A. F. Yakunin
Structural And Biochemical Studies Of Novel Aldo-Keto Reductases For The Biocatalytic Conversion Of 3-Hydroxybutanal To 1, 3-Butanediol.
Appl. Environ. Microbiol. 2017
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAC
4
Ligand/Ion
CACODYLATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
LEU A:269 , ARG A:272 , GLU A:320 , EDO A:339 , HOH A:430 , ASN B:169
BINDING SITE FOR RESIDUE EDO A 338
02
AC7
SOFTWARE
ARG A:272 , EDO A:338 , HOH A:443 , TYR B:170 , VAL B:203 , HOH B:782
BINDING SITE FOR RESIDUE EDO A 339
03
AC9
SOFTWARE
ALA A:257 , ASP A:258 , GLU A:261 , ARG A:331 , PHE A:332 , TYR B:15 , LYS B:24 , HOH B:772
BINDING SITE FOR RESIDUE EDO A 341
04
BC3
SOFTWARE
THR A:40 , ARG A:41 , HOH A:383 , ARG B:41
BINDING SITE FOR RESIDUE EDO A 344
05
BC4
SOFTWARE
CYS A:75 , ASN A:76 , ARG A:79 , HOH A:480 , ARG B:79 , HOH B:733 , HOH B:827
BINDING SITE FOR RESIDUE EDO A 345
06
BC6
SOFTWARE
HIS B:155 , HOH B:895 , HOH B:897 , HOH B:901
BINDING SITE FOR RESIDUE ZN B 333
07
BC7
SOFTWARE
LYS B:97 , HIS B:138 , SER B:168 , GLN B:193 , CAC B:338
BINDING SITE FOR RESIDUE NA B 334
08
BC8
SOFTWARE
SER B:222 , LEU B:224 , GLY B:226
BINDING SITE FOR RESIDUE CL B 335
09
BC9
SOFTWARE
SER A:317 , HOH A:430 , LYS B:195 , HOH B:665
BINDING SITE FOR RESIDUE CL B 336
10
CC1
SOFTWARE
HIS B:155 , HIS B:159 , HOH B:637
BINDING SITE FOR RESIDUE CL B 337
11
CC2
SOFTWARE
TRP B:33 , TYR B:66 , HIS B:138 , ASN B:169 , PHE B:221 , NA B:334
BINDING SITE FOR RESIDUE CAC B 338
12
CC3
SOFTWARE
ALA B:172 , ASP B:173 , ARG B:176 , HOH B:771 , HOH B:852
BINDING SITE FOR RESIDUE EDO B 339
13
CC4
SOFTWARE
ALA A:326 , TYR B:100 , THR B:101 , ARG B:139 , HOH B:550 , HOH B:577 , HOH B:638 , HOH B:693 , HOH B:884
BINDING SITE FOR RESIDUE EDO B 340
14
CC5
SOFTWARE
ARG A:41 , THR B:39 , THR B:40 , ARG B:41 , ASN B:44 , HOH B:657 , HOH B:892
BINDING SITE FOR RESIDUE EDO B 341
15
CC6
SOFTWARE
ARG A:272 , ARG A:273 , ASN A:313 , GLU B:200 , TRP B:202 , HOH B:579 , HOH B:782
BINDING SITE FOR RESIDUE EDO B 342
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3erpa_ (A:)
1b: SCOP_d3erpb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Salmonella enterica [TaxId: 99287]
(1)
1a
d3erpa_
A:
1b
d3erpb_
B:
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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Show PDB file:
Asym.Unit (140 KB)
Header - Asym.Unit
Biol.Unit 1 (524 KB)
Header - Biol.Unit 1
Biol.Unit 2 (274 KB)
Header - Biol.Unit 2
Biol.Unit 3 (255 KB)
Header - Biol.Unit 3
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