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3ERC
Biol. Unit 1
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Asym.Unit (242 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HETERODIMERIC VACCINIA VIRUS MRNA POLYADENYLATE POLYMERASE WITH THREE FRAGMENTS OF RNA AND 3'-DEOXY ATP
Authors
:
C. Li, H Li, S. Zhou, T. L. Poulos, P. D. Gershon
Date
:
01 Oct 08 (Deposition) - 16 Jun 09 (Release) - 16 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.21
Chains
:
Asym. Unit : A,B,C,D,E,F,G,I
Biol. Unit 1: A,D,E,I (1x)
Biol. Unit 2: B,C,F,G (1x)
Keywords
:
Polyadenylate Polymerase, Translocation, Single Tranded Rna Poly(A) Polymerase, Rna Protein Complex, Processivity, Heterodimer, Nucleotidyltransferase, Poxvirus; Methyltransferase, Mrna Capping, Mrna Processing, S- Adenosyl-L-Methionine, Transcription, Transferase, Transferase/Dna, Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Li, H. Li, S. Zhou, E. Sun, J. Yoshizawa, T. L. Poulos, P. D. Gershon
Polymerase Translocation With Respect To Single-Stranded Nucleic Acid: Looping Or Wrapping Of Primer Around A Poly(A) Polymerase
Structure V. 17 680 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE (3ATa)
1b: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE (3ATb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: URIDINE-5'-MONOPHOSPHATE (Ua)
3b: URIDINE-5'-MONOPHOSPHATE (Ub)
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No.
Name
Count
Type
Full Name
1
3AT
1
Ligand/Ion
3'-DEOXYADENOSINE-5'-TRIPHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
U
-1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
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Sites
(4, 4)
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1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASN D:90 , LYS D:93 , THR D:96 , ASP D:475 , ILE D:476 , ILE D:477
BINDING SITE FOR RESIDUE U D 602
2
AC3
SOFTWARE
GLY D:187 , SER D:188 , GLY D:201 , ASP D:202 , ASP D:204 , ASN D:284 , MET D:288 , ARG D:294 , LYS D:304 , ARG D:308 , ASN D:402 , CA D:904 , DC E:605
BINDING SITE FOR RESIDUE 3AT D 800
3
AC7
SOFTWARE
ASP D:202 , ASP D:204 , ASP D:253 , DC E:605
BINDING SITE FOR RESIDUE CA D 903
4
AC8
SOFTWARE
ASP D:202 , ASP D:204 , 3AT D:800 , DC E:605
BINDING SITE FOR RESIDUE CA D 904
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
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1: SAM_MT_2O_PK (A:4-262)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_MT_2O_PK
PS51612
Poxvirus/kinetoplastid-type ribose 2'-O-methyltransferase (EC 2.1.1.57) family profile.
MCE_VACCW
4-262
1
A:4-262
-
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Exons
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SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ercA00 (A:1-297)
1b: CATH_3ercB00 (B:1-297)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Vaccinia virus wr. Organism_taxid: 10254. Strain: western reserve / wr.
(3)
1a
3ercA00
A:1-297
1b
3ercB00
B:1-297
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (242 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Biol.Unit 2 (120 KB)
Header - Biol.Unit 2
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