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Getting 'Exon' information from database.
3ERB
Asym. Unit
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Asym.Unit (37 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF C2B, A FRAGMENT OF COMPLEMENT COMPONENT C2 PRODUCED DURING C3-CONVERTASE FORMATION
Authors
:
S. V. L. Narayan, V. Krishnan
Date
:
01 Oct 08 (Deposition) - 10 Mar 09 (Release) - 10 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Complement Component C2B, C3/C5 Convertase, Complement Control Protein (Ccp), Short Consensus Repeat(Scr), Sushi Domain, Human Complement System, Complement Second Component C2, Complement Pathway, Disease Mutation, Glycoprotein, Hydrolase, Immune Response, Innate Immunity, Polymorphism, Protease, Secreted, Serine Protease, Sushi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Krishnan, Y. Xu, K. Macon, J. E. Volanakis, S. V. Narayana
The Structure Of C2B, A Fragment Of Complement Component C2 Produced During C3 Convertase Formation
Acta Crystallogr. , Sect. D V. 65 266 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_008544 (C111Y, chain A, )
2: VAR_008545 (S189F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_008544
C
131
Y
CO2_HUMAN
Disease (C2D)
---
A
C
111
Y
2
UniProt
VAR_008545
S
209
F
CO2_HUMAN
Disease (C2D)
28934590
A
S
189
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:67-126|A:129-186)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CO2_HUMAN
22-86
87-146
149-206
2
-
A:67-126
A:129-186
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Exons
(4, 4)
Info
All Exons
Exon 1.25k (A:3-66 (gaps))
Exon 1.25m (A:66-128)
Exon 1.33e (A:128-186)
Exon 1.33g (A:186-197)
View:
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All Exon Boundaries
1: Boundary 1.25a/1.25k
2: Boundary 1.25k/1.25m
3: Boundary 1.25m/1.33e
4: Boundary 1.33e/1.33g
5: Boundary 1.33g/1.33j
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.25a
ENST00000383362
25a
ENSE00001853166
HSCHR6_MHC_QBL:31885665-31885971
307
CO2_HUMAN
1-16
16
0
-
-
1.25k
ENST00000383362
25k
ENSE00002156028
HSCHR6_MHC_QBL:31886128-31886337
210
CO2_HUMAN
16-86
71
1
A:3-66 (gaps)
64
1.25m
ENST00000383362
25m
ENSE00001594373
HSCHR6_MHC_QBL:31886905-31887090
186
CO2_HUMAN
86-148
63
1
A:66-128
63
1.33e
ENST00000383362
33e
ENSE00002151523
HSCHR6_MHC_QBL:31891783-31891956
174
CO2_HUMAN
148-206
59
1
A:128-186
59
1.33g
ENST00000383362
33g
ENSE00002200460
HSCHR6_MHC_QBL:31892040-31892138
99
CO2_HUMAN
206-239
34
1
A:186-197
12
1.33j
ENST00000383362
33j
ENSE00001787345
HSCHR6_MHC_QBL:31892339-31892472
134
CO2_HUMAN
239-283
45
0
-
-
1.36h
ENST00000383362
36h
ENSE00001794636
HSCHR6_MHC_QBL:31894096-31894234
139
CO2_HUMAN
284-330
47
0
-
-
1.36x
ENST00000383362
36x
ENSE00002172075
HSCHR6_MHC_QBL:31895492-31895632
141
CO2_HUMAN
330-377
48
0
-
-
1.37b
ENST00000383362
37b
ENSE00002191951
HSCHR6_MHC_QBL:31897404-31897493
90
CO2_HUMAN
377-407
31
0
-
-
1.48b
ENST00000383362
48b
ENSE00002174341
HSCHR6_MHC_QBL:31901133-31901273
141
CO2_HUMAN
407-454
48
0
-
-
1.49b
ENST00000383362
49b
ENSE00002169338
HSCHR6_MHC_QBL:31901399-31901493
95
CO2_HUMAN
454-485
32
0
-
-
1.50a
ENST00000383362
50a
ENSE00002167630
HSCHR6_MHC_QBL:31901590-31901701
112
CO2_HUMAN
486-523
38
0
-
-
1.51b
ENST00000383362
51b
ENSE00002150511
HSCHR6_MHC_QBL:31901818-31901983
166
CO2_HUMAN
523-578
56
0
-
-
1.51j
ENST00000383362
51j
ENSE00002151638
HSCHR6_MHC_QBL:31902091-31902167
77
CO2_HUMAN
578-604
27
0
-
-
1.51k
ENST00000383362
51k
ENSE00002180220
HSCHR6_MHC_QBL:31902309-31902400
92
CO2_HUMAN
604-634
31
0
-
-
1.52b
ENST00000383362
52b
ENSE00002173165
HSCHR6_MHC_QBL:31902901-31903027
127
CO2_HUMAN
635-677
43
0
-
-
1.53c
ENST00000383362
53c
ENSE00001729514
HSCHR6_MHC_QBL:31903154-31903203
50
CO2_HUMAN
677-693
17
0
-
-
1.54e
ENST00000383362
54e
ENSE00001787775
HSCHR6_MHC_QBL:31903352-31903846
495
CO2_HUMAN
694-752
59
0
-
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3erba1 (A:3-67)
1b: SCOP_d3erba2 (A:68-128)
1c: SCOP_d3erba3 (A:129-197)
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Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3erba1
A:3-67
1b
d3erba2
A:68-128
1c
d3erba3
A:129-197
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (37 KB)
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