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3EQP
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACK1 WITH COMPOUND T95
Authors
:
J. Liu, Z. Wang, N. P. C. Walker
Date
:
01 Oct 08 (Deposition) - 02 Dec 08 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A (1x)
Keywords
:
Ack1, Alternative Splicing, Atp-Binding, Cell Membrane, Kinase, Magnesium, Membrane, Metal-Binding, Nucleotide- Binding, Phosphoprotein, Polymorphism, Sh3 Domain, Transferase, Tyrosine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Kopecky, X. Hao, Y. Chen, J. Fu, X. Jiao, J. C. Jaen, M. G. Cardozo, J. Liu, Z. Wang, N. P. Walker, H. Wesche, S. Li, E. Farrelly, S. H. Xiao, F. Kayser
Identification And Optimization Of N3, N6-Diaryl-1H-Pyrazolo[3, 4-D]Pyrimidine-3, 6- Diamines As A Novel Class Of Ack1 Inhibitors.
Bioorg. Med. Chem. Lett. V. 18 6352 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: N-(2,6-DIMETHYLPHENYL)-4-(2-ETHOXY... (T95a)
2b: N-(2,6-DIMETHYLPHENYL)-4-(2-ETHOXY... (T95b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
T95
2
Ligand/Ion
N-(2,6-DIMETHYLPHENYL)-4-(2-ETHOXYPHENOXY)-2-({4-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PHENYL}AMINO)PYRIMIDINE-5-CARBOXAMIDE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:383 , LEU B:132 , GLY B:133 , VAL B:140 , ALA B:156 , LYS B:158 , GLU B:177 , ILE B:190 , THR B:205 , ALA B:208 , GLY B:211 , ARG B:256 , ASN B:257 , LEU B:259 , HOH B:398 , HOH B:430
BINDING SITE FOR RESIDUE T95 B 1
2
AC2
SOFTWARE
ARG B:216 , HIS B:220 , ARG B:263
BINDING SITE FOR RESIDUE CL B 393
3
AC3
SOFTWARE
LEU A:132 , VAL A:140 , ALA A:156 , LYS A:158 , GLU A:177 , ILE A:190 , THR A:205 , ALA A:208 , PRO A:209 , GLY A:211 , ARG A:256 , ASN A:257 , LEU A:259 , HOH A:396
BINDING SITE FOR RESIDUE T95 A 1
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032796 (T152M, chain A/B, )
2: VAR_032797 (E346K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032796
T
152
M
ACK1_HUMAN
Polymorphism
56161912
A/B
T
152
M
2
UniProt
VAR_032797
E
346
K
ACK1_HUMAN
Unclassified
---
A/B
E
346
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:132-158,B:132-158)
2: PROTEIN_KINASE_TYR (A:248-260,B:248-260)
3: SH3 (A:373-390,B:373-392)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ACK1_HUMAN
132-158
2
A:132-158
B:132-158
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
ACK1_HUMAN
248-260
2
A:248-260
B:248-260
3
SH3
PS50002
Src homology 3 (SH3) domain profile.
ACK1_HUMAN
373-448
2
A:373-390
B:373-392
[
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]
Exons
(6, 12)
Info
All Exons
Exon 1.13e (A:117-152 | B:117-152)
Exon 1.13f (A:153-203 (gaps) | B:153-203 (gaps...)
Exon 1.15b (A:204-296 | B:204-296)
Exon 1.16d (A:296-338 | B:296-338)
Exon 1.17b (A:339-387 | B:339-387)
Exon 1.18 (A:388-390 | B:388-392)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12a/1.13e
2: Boundary 1.13e/1.13f
3: Boundary 1.13f/1.15b
4: Boundary 1.15b/1.16d
5: Boundary 1.16d/1.17b
6: Boundary 1.17b/1.18
7: Boundary 1.18/1.21c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000333602
2
ENSE00001349875
chr3:
195635955-195635356
600
ACK1_HUMAN
-
0
0
-
-
1.11a
ENST00000333602
11a
ENSE00002160972
chr3:
195615477-195615297
181
ACK1_HUMAN
1-55
55
0
-
-
1.12a
ENST00000333602
12a
ENSE00001304480
chr3:
195613918-195613848
71
ACK1_HUMAN
55-78
24
0
-
-
1.13e
ENST00000333602
13e
ENSE00001329097
chr3:
195611904-195611683
222
ACK1_HUMAN
79-152
74
2
A:117-152
B:117-152
36
36
1.13f
ENST00000333602
13f
ENSE00001311022
chr3:
195610180-195610028
153
ACK1_HUMAN
153-203
51
2
A:153-203 (gaps)
B:153-203 (gaps)
51
51
1.15b
ENST00000333602
15b
ENSE00001607977
chr3:
195609199-195608922
278
ACK1_HUMAN
204-296
93
2
A:204-296
B:204-296
93
93
1.16d
ENST00000333602
16d
ENSE00001309827
chr3:
195606046-195605920
127
ACK1_HUMAN
296-338
43
2
A:296-338
B:296-338
43
43
1.17b
ENST00000333602
17b
ENSE00001293158
chr3:
195605463-195605317
147
ACK1_HUMAN
339-387
49
2
A:339-387
B:339-387
49
49
1.18
ENST00000333602
18
ENSE00001316210
chr3:
195605218-195605124
95
ACK1_HUMAN
388-419
32
2
A:388-390
B:388-392
3
5
1.21c
ENST00000333602
21c
ENSE00001299263
chr3:
195599341-195599147
195
ACK1_HUMAN
419-484
66
0
-
-
1.22f
ENST00000333602
22f
ENSE00001317846
chr3:
195597076-195596985
92
ACK1_HUMAN
484-515
32
0
-
-
1.22r
ENST00000333602
22r
ENSE00001300682
chr3:
195595580-195594232
1349
ACK1_HUMAN
515-964
450
0
-
-
1.23b
ENST00000333602
23b
ENSE00001317558
chr3:
195594129-195594040
90
ACK1_HUMAN
965-994
30
0
-
-
1.24
ENST00000333602
24
ENSE00001301267
chr3:
195593887-195593760
128
ACK1_HUMAN
995-1037
43
0
-
-
1.25b
ENST00000333602
25b
ENSE00001770160
chr3:
195591058-195590235
824
ACK1_HUMAN
1037-1038
2
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3eqpa_ (A:)
1b: SCOP_d3eqpb_ (B:)
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)
(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Activated CDC42 kinase 1, ACK1
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d3eqpa_
A:
1b
d3eqpb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3eqpA01 (A:117-207)
1b: CATH_3eqpB01 (B:117-207)
2a: CATH_3eqpB02 (B:208-392)
2b: CATH_3eqpA02 (A:208-390)
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)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3eqpA01
A:117-207
1b
3eqpB01
B:117-207
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3eqpB02
B:208-392
2b
3eqpA02
A:208-390
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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